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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:122.6 nTPM
HPA Brain:103.5 nTPM
GTEx:122.6 nTPM
FANTOM5:123.4 Scaled Tags Per Million
Pig:124.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 89.2
1981 Female, age 72, midline 117.0
2565 Male, age 75, midline 87.9
2194 Female, age 79, both hemispheres 83.8
2048 Male, age 55, midline 81.7
2816 Male, age 47, midline 75.8
Cervical spinal cord, dorsal horn
nTPM: 91.9
2173 Female, age 72, unknown 131.8
2069 Male, age 47, both hemispheres 100.0
2296 Male, age 66, both hemispheres 97.4
2297 Male, age 75, both hemispheres 76.3
1877 Male, age 55, unknown 75.2
2721 Male, age 90, both hemispheres 70.7
Cervical spinal cord, ventral horn
nTPM: 103.5
2098 Female, age 72, unknown 125.6
2480 Male, age 75, both hemispheres 119.7
2809 Male, age 90, both hemispheres 117.1
2068 Male, age 55, unknown 98.0
2295 Male, age 66, both hemispheres 89.6
2820 Female, age 79, both hemispheres 70.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 122.6
Samples: 159

Max nTPM: 224.8
Min nTPM: 81.8
Std nTPM: 21.6
Median nTPM: 118.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 224.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 201.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 177.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 168.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 164.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 163.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 162.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 160.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 159.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 156.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 156.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 155.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 154.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 154.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 152.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 152.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 151.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 151.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 150.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 149.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 149.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 148.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 148.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 147.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 145.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 144.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 143.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 143.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 140.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 140.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 140.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 139.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 138.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 138.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 137.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 136.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 136.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 135.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 135.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 134.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 132.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 132.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 132.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 131.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 131.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 130.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 130.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 129.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 128.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 127.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 127.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 126.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 126.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 125.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 125.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 124.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 124.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 124.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 124.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 123.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 123.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 123.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 123.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 122.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 122.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 122.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 122.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 122.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 121.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 121.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 121.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 121.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 121.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 120.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 120.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 119.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 119.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 119.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 118.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 118.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 118.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 117.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 116.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 116.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 116.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 116.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 116.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 116.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 116.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 116.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 115.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 115.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 115.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 114.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 114.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 114.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 114.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 114.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 113.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 113.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 113.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 113.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 112.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 112.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 112.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 112.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 111.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 111.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 111.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 111.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 110.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 110.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 110.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 110.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 110.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 109.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 109.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 108.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 108.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 107.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 107.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 107.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 107.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 107.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 107.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 105.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 105.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 105.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 104.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 104.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 104.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 104.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 104.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 103.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 103.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 103.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 101.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 101.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 101.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 101.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 100.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 99.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 99.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 99.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 98.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 98.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 97.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 97.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 96.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 96.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 96.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 95.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 95.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 91.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 90.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 87.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 86.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 82.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 81.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

123.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 123.4
FF:10181-103D1 60 years, female 152.3
FF:10159-103A6 76 years, female 94.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 102.0
Samples: 4

Max nTPM: 111.1
Min nTPM: 91.0
Sample A Female 111.1
Sample B Female 97.5
Sample C Male 91.0
Sample D Male 108.3
Ventral spinal cord
nTPM: 124.2
Samples: 4

Max nTPM: 143.2
Min nTPM: 110.7
Sample A Female 111.8
Sample B Female 143.2
Sample C Male 131.0
Sample D Male 110.7

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