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SLC25A5
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:547.2 nTPM
HPA:547.2 nTPM
GTEx:391.0 nTPM
FANTOM5:1006.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA071684
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

547.2
overview
Male, age 65
Small intestine sample 232
nTPM: 608.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 654.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 380.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 545.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

391.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 391.0
Samples: 187

Max nTPM: 1415.6
Min nTPM: 84.4
Std nTPM: 276.6
Median nTPM: 289.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1415.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1377.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1100.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1091.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1076.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1047.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1036.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1018.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1017.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 958.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 943.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 916.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 861.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 831.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 826.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 825.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 817.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 812.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 786.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 784.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 784.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 778.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 754.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 742.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 739.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 738.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 730.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 730.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 712.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 698.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 689.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 677.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 667.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 665.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 659.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 656.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 641.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 636.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 635.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 625.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 619.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 612.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 606.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 585.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 583.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 533.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 523.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 514.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 514.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 508.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 500.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 497.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 493.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 492.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 486.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 484.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 481.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 479.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 469.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 468.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 464.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 463.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 447.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 429.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 421.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 421.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 417.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 416.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 409.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 408.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 404.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 404.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 401.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 397.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 383.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 382.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 368.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 355.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 355.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 351.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 345.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 339.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 337.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 327.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 327.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 322.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 316.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 314.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 313.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 299.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 299.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 298.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 295.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 289.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 277.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 277.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 267.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 263.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 257.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 256.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 253.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 251.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 245.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 240.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 235.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 234.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 231.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 229.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 228.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 226.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 226.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 221.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 220.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 215.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 207.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 206.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 206.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 204.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 204.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 203.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 201.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 200.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 200.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 200.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 199.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 198.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 197.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 192.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 191.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 190.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 189.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 188.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 187.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 186.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 185.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 183.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 183.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 181.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 181.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 180.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 179.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 179.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 175.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 172.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 172.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 172.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 171.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 169.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 168.3
GTEX-1192X-2526-SM-59868 50-59 years, male 167.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 166.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 166.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 166.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 165.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 164.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 161.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 161.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 152.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 151.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 151.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 150.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 149.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 147.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 145.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 144.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 142.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 139.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 137.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 136.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 135.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 133.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 129.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 129.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 127.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 126.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 125.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 123.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 118.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 116.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 115.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 114.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 110.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 106.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 99.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 95.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 85.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 84.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1006.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1006.7
FF:10024-101D6 15,40,85 years, mixed 1006.7

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