We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TSPOAP1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • TSPOAP1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:175.9 nTPM
HPA Brain:95.4 nTPM
GTEx:175.9 nTPM
FANTOM5:266.4 Scaled Tags Per Million
Pig:20.8 nTPM
Mouse:48.3 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.4
Sample id Sample description nTPM
Amygdala
nTPM: 56.6
2517 Female, age 94, left hemisphere 67.5
1987 Female, age 91, left hemisphere 58.4
2814 Male, age 76, right hemisphere 54.8
2695 Female, age 67, right hemisphere 51.6
2514 Male, age 75, right hemisphere 50.5
Basal amygdala
nTPM: 92.9
2827 Female, age 67, right hemisphere 119.7
2685 Female, age 94, left hemisphere 114.1
2243 Female, age 91, right hemisphere 100.2
2110 Male, age 80, left hemisphere 77.0
2609 Male, age 75, right hemisphere 76.2
1955 Male, age 76, both hemispheres 70.4
Central amygdala
nTPM: 95.4
2826 Female, age 94, left hemisphere 189.0
2239 Male, age 80, left hemisphere 87.7
2701 Female, age 91, right hemisphere 69.0
2515 Male, age 75, right hemisphere 66.6
1905 Male, age 76, both hemispheres 64.7
Corticomedial amygdala
nTPM: 84.3
2535 Female, age 67, right hemisphere 113.0
2429 Female, age 94, left hemisphere 95.1
2242 Female, age 91, right hemisphere 88.1
2829 Male, age 80, left hemisphere 82.7
2240 Male, age 76, both hemispheres 63.5
2428 Male, age 75, right hemisphere 63.5
Lateral amygdala
nTPM: 93.6
2534 Female, age 94, left hemisphere 180.3
2256 Male, age 80, left hemisphere 98.7
2255 Female, age 91, right hemisphere 94.0
2830 Female, age 67, right hemisphere 72.0
2516 Male, age 75, right hemisphere 58.3
1883 Male, age 76, both hemispheres 58.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 175.9
Samples: 152

Max nTPM: 553.0
Min nTPM: 4.6
Std nTPM: 90.9
Median nTPM: 157.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 553.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 498.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 491.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 396.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 384.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 381.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 376.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 370.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 361.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 357.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 340.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 317.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 303.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 293.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 290.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 289.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 287.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 285.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 284.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 284.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 271.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 257.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 246.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 244.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 242.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 241.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 240.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 239.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 236.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 235.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 229.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 224.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 221.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 221.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 220.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 219.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 219.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 218.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 218.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 216.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 208.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 206.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 204.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 204.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 202.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 201.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 201.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 198.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 193.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 193.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 192.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 191.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 187.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 187.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 187.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 187.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 185.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 185.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 185.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 182.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 179.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 178.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 176.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 174.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 174.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 174.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 173.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 173.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 171.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 170.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 166.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 166.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 164.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 163.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 159.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 157.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 157.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 156.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 155.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 151.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 149.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 148.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 146.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 146.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 146.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 144.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 142.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 141.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 138.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 136.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 136.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 135.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 135.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 135.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 131.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 131.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 131.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 130.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 130.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 129.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 129.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 124.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 124.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 124.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 123.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 119.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 118.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 117.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 116.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 112.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 111.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 111.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 110.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 110.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 110.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 109.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 108.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 108.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 107.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 106.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 105.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 104.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 103.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 102.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 101.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 97.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 97.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 96.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 95.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 93.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 93.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 91.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 89.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 89.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 88.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 88.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 87.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 86.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 86.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 84.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 83.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 77.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 75.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 75.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 72.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 69.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 65.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 60.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 58.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 57.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 36.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

266.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 266.4
FF:10151-102I7 76 years, female 266.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.8
Pig sample Sample description nTPM
Amygdala
nTPM: 20.9
Samples: 4

Max nTPM: 25.2
Min nTPM: 16.9
Sample A Female 25.2
Sample B Female 16.9
Sample C Male 20.9
Sample D Male 20.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 48.3
Samples: 4

Max nTPM: 57.8
Min nTPM: 35.8
Sample A Male 35.8
Sample B Male 55.1
Sample C Female 57.8
Sample D Female 44.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org