MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:76.4 nTPM
HPA Brain:124.9 nTPM
GTEx:76.4 nTPM
FANTOM5:82.4 Scaled Tags Per Million
Pig:74.0 nTPM
Mouse:27.4 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 124.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 103.4
2586 Male, age 75, left hemisphere 127.4
1830 Male, age 51, unknown 125.4
2411 Female, age 72, unknown 123.3
1833 Male, age 53, unknown 120.6
2828 Female, age 72, unknown 105.1
2019 Male, age 18, unknown 103.2
1870 Female, age 42, unknown 100.0
2219 Male, age 76, both hemispheres 81.0
2666 Male, age 74, left hemisphere 75.1
1827 Male, age 72, unknown 73.0
Dorsal raphe nucleus
nTPM: 71.1
2750 Male, age 76, both hemispheres 110.6
2016 Female, age 72, unknown 78.2
1828 Male, age 53, unknown 71.0
2047 Male, age 72, unknown 51.7
2298 Female, age 72, unknown 43.9
Inferior colliculus
nTPM: 67.1
2849 Male, age 72, unknown 72.8
1890 Male, age 53, unknown 71.3
1848 Female, age 42, unknown 67.4
2097 Female, age 72, unknown 56.8
Median raphe nucleus
nTPM: 57.6
2220 Male, age 76, midline 57.6
Periaquaductal grey, anterior
nTPM: 75.5
2502 Female, age 75, unknown 103.4
1947 Male, age 18, unknown 65.5
1795 Male, age 51, unknown 57.5
Periaquaductal grey, dorsal
nTPM: 53.8
2464 Female, age 72, unknown 80.5
1831 Male, age 72, unknown 50.2
2850 Male, age 76, both hemispheres 43.0
1840 Male, age 53, unknown 41.4
Periaquaductal grey, lateral
nTPM: 62.2
2272 Male, age 74, both hemispheres 67.6
2053 Male, age 18, unknown 60.4
2140 Male, age 76, both hemispheres 58.7
Pretectal area
nTPM: 68.0
2316 Male, age 76, right hemisphere 104.4
2407 Male, age 75, both hemispheres 90.5
1815 Male, age 53, unknown 85.2
2825 Male, age 18, unknown 71.6
2007 Male, age 72, unknown 69.8
1817 Female, age 42, unknown 67.2
2667 Female, age 75, unknown 59.6
2224 Female, age 72, unknown 55.6
2273 Male, age 74, both hemispheres 53.1
1944 Female, age 72, unknown 45.8
1816 Male, age 51, unknown 45.3
Red nucleus
nTPM: 124.9
1904 Male, age 53, unknown 151.2
2769 Male, age 72, unknown 144.5
2227 Male, age 72, unknown 143.4
1865 Male, age 51, unknown 142.3
2785 Male, age 18, unknown 134.9
2503 Female, age 72, unknown 127.3
2823 Male, age 76, right hemisphere 126.2
2584 Male, age 75, left hemisphere 115.0
1821 Female, age 72, unknown 114.7
2588 Male, age 74, left hemisphere 107.8
1954 Female, age 42, unknown 105.5
2725 Female, age 75, unknown 86.2
Substantia nigra
nTPM: 76.9
2583 Male, age 75, right hemisphere 102.3
2699 Male, age 18, unknown 97.0
2590 Female, age 75, unknown 91.4
1851 Male, age 51, unknown 86.6
2409 Female, age 72, unknown 78.8
1889 Female, age 72, unknown 73.7
2665 Male, age 74, both hemispheres 65.6
1941 Male, age 53, unknown 59.0
1916 Female, age 42, unknown 58.5
2241 Male, age 72, unknown 55.7
Superior colliculus
nTPM: 90.4
1995 Male, age 72, unknown 138.7
1913 Female, age 42, unknown 128.2
1895 Male, age 76, right hemisphere 100.3
1839 Male, age 51, unknown 97.3
2587 Male, age 74, left hemisphere 84.8
2664 Male, age 75, both hemispheres 84.1
2668 Female, age 75, unknown 79.7
1796 Male, age 53, unknown 78.0
2261 Male, age 18, unknown 63.6
2087 Female, age 72, unknown 49.3
Ventral tegmental area
nTPM: 84.0
2223 Female, age 72, unknown 114.6
2410 Female, age 72, unknown 101.2
1942 Male, age 51, unknown 82.0
1915 Female, age 42, unknown 69.1
2218 Male, age 76, both hemispheres 68.8
2021 Male, age 53, unknown 68.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 76.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.4
Samples: 139

Max nTPM: 233.5
Min nTPM: 21.0
Std nTPM: 34.5
Median nTPM: 72.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 233.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 207.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 183.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 173.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 164.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 151.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 147.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 142.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 135.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 132.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 129.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 82.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.4
FF:10158-103A5 76 years, female 82.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 74.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 69.9
Samples: 4

Max nTPM: 94.7
Min nTPM: 49.3
Sample A Female 77.3
Sample B Female 49.3
Sample C Male 58.2
Sample D Male 94.7
Midbrain
nTPM: 74.0
Samples: 4

Max nTPM: 151.7
Min nTPM: 40.6
Sample A Female 151.7
Sample B Female 62.4
Sample C Male 40.6
Sample D Male 41.3
Periaqueductal gray
nTPM: 53.3
Samples: 3

Max nTPM: 60.7
Min nTPM: 46.3
Sample B Female 60.7
Sample C Male 46.3
Sample D Male 52.8
Superior colliculi
nTPM: 53.8
Samples: 4

Max nTPM: 68.8
Min nTPM: 30.0
Sample A Female 68.8
Sample B Female 30.0
Sample C Male 53.4
Sample D Male 62.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 27.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.4
Samples: 4

Max nTPM: 29.5
Min nTPM: 25.0
Sample A Male 29.5
Sample B Male 25.0
Sample C Female 25.6
Sample D Female 29.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
74988736 Antisense, RP_060315_04_B04, Mouse strain C57BL/6J (56 days, male) 2.6
70593371 Antisense, RP_050407_04_B08, Mouse strain C57BL/6J (56 days, male) 1.7

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