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  • AP2B1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:73.0 nTPM
FANTOM5:151.5 Scaled Tags Per Million
Pig:93.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA067983Antibody CAB017631
Glial cells LowNot detected
Neuronal cells HighLow




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 73.0
Samples: 246

Max nTPM: 101.6
Min nTPM: 49.0
Std nTPM: 9.1
Median nTPM: 72.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 101.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 95.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 95.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 94.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 93.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 92.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 92.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 91.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 90.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 89.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 89.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 88.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 88.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 87.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 87.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 86.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 86.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 86.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 86.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 85.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 85.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 85.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 85.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 85.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 85.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 85.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 84.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 84.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 84.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 84.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 84.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 84.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 83.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 83.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 83.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 83.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 83.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 83.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 82.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 82.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 82.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 82.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 82.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 81.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 81.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 81.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 80.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 80.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 80.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 80.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 80.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 80.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 80.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 80.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 80.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 80.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 79.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 79.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 79.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 79.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 79.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 79.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 79.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 78.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 78.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 78.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 78.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 78.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 78.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 78.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 78.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 78.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 78.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 78.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 78.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 77.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 77.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 77.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 77.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 77.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 77.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 77.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 77.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 77.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 77.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 76.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 76.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 76.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 76.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 76.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 76.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 76.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 76.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 76.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 75.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 75.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 75.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 75.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 75.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 75.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 75.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 75.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 74.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 74.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 74.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 74.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 73.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 73.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 73.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 73.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 73.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 73.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 73.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 73.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 73.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 73.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 72.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 72.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 72.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 72.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 72.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 72.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 72.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 72.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 71.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 71.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 71.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 71.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 71.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 71.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 70.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 70.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 70.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 70.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 70.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 70.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 70.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 70.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 70.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 70.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 70.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 70.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 70.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 70.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 70.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 69.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 69.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 69.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 69.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 69.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 69.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 69.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 69.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 69.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 69.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 69.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 69.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 69.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 69.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 69.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 69.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 69.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 68.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 68.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 68.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 68.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 68.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 68.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 68.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 68.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 67.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 67.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 67.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 67.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 67.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 67.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 67.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 67.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 67.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 67.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 67.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 66.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 66.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 66.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 66.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 66.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 66.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 66.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 66.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 66.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 66.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 66.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 65.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 65.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 65.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 65.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 65.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 65.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 65.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 64.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 64.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 64.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 64.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 64.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 64.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 64.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 64.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 64.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 64.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 64.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 64.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 64.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 63.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 63.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 63.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 63.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 63.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 63.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 62.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 62.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 62.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 61.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 61.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 61.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 61.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 61.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 61.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 61.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 60.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 60.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 60.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 59.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 58.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 58.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 58.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 57.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 56.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 56.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 56.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 55.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 55.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 54.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 52.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 51.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 51.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 49.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

151.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 151.5
FF:10164-103B2 76 years, female 151.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.3
Pig sample Sample description nTPM
Caudate
nTPM: 93.3
Samples: 4

Max nTPM: 103.0
Min nTPM: 86.1
Sample A Female 86.1
Sample B Female 95.1
Sample C Male 103.0
Sample D Male 88.8

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