MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.4 nTPM
HPA Brain:156.9 nTPM
GTEx:72.4 nTPM
FANTOM5:136.0 Scaled Tags Per Million
Pig:96.4 nTPM
Mouse:100.9 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 156.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 132.4
2586 Male, age 75, left hemisphere 143.7
1827 Male, age 72, unknown 142.7
2411 Female, age 72, unknown 142.7
2666 Male, age 74, left hemisphere 141.8
2828 Female, age 72, unknown 134.8
2019 Male, age 18, unknown 131.7
1870 Female, age 42, unknown 127.6
1833 Male, age 53, unknown 123.6
2219 Male, age 76, both hemispheres 119.0
1830 Male, age 51, unknown 116.3
Dorsal raphe nucleus
nTPM: 137.5
2298 Female, age 72, unknown 146.7
2047 Male, age 72, unknown 144.7
2750 Male, age 76, both hemispheres 134.5
1828 Male, age 53, unknown 132.9
2016 Female, age 72, unknown 128.5
Inferior colliculus
nTPM: 122.4
2097 Female, age 72, unknown 130.7
1890 Male, age 53, unknown 123.1
1848 Female, age 42, unknown 121.5
2849 Male, age 72, unknown 114.2
Median raphe nucleus
nTPM: 131.2
2220 Male, age 76, midline 131.2
Periaquaductal grey, anterior
nTPM: 140.5
2502 Female, age 75, unknown 143.6
1947 Male, age 18, unknown 140.0
1795 Male, age 51, unknown 137.8
Periaquaductal grey, dorsal
nTPM: 125.2
1840 Male, age 53, unknown 135.4
2464 Female, age 72, unknown 122.7
1831 Male, age 72, unknown 122.2
2850 Male, age 76, both hemispheres 120.4
Periaquaductal grey, lateral
nTPM: 118.0
2053 Male, age 18, unknown 129.1
2272 Male, age 74, both hemispheres 115.4
2140 Male, age 76, both hemispheres 109.6
Pretectal area
nTPM: 139.1
1816 Male, age 51, unknown 169.0
1944 Female, age 72, unknown 156.0
1817 Female, age 42, unknown 152.1
2007 Male, age 72, unknown 147.3
1815 Male, age 53, unknown 146.3
2667 Female, age 75, unknown 146.1
2224 Female, age 72, unknown 128.9
2273 Male, age 74, both hemispheres 127.1
2407 Male, age 75, both hemispheres 124.8
2825 Male, age 18, unknown 124.5
2316 Male, age 76, right hemisphere 107.9
Red nucleus
nTPM: 125.2
1821 Female, age 72, unknown 151.5
2584 Male, age 75, left hemisphere 132.5
1904 Male, age 53, unknown 129.5
1954 Female, age 42, unknown 127.7
2588 Male, age 74, left hemisphere 125.8
2769 Male, age 72, unknown 124.9
2785 Male, age 18, unknown 121.5
2227 Male, age 72, unknown 120.5
2503 Female, age 72, unknown 119.2
2725 Female, age 75, unknown 118.1
1865 Male, age 51, unknown 116.9
2823 Male, age 76, right hemisphere 113.8
Substantia nigra
nTPM: 156.9
1916 Female, age 42, unknown 200.6
2241 Male, age 72, unknown 179.8
1851 Male, age 51, unknown 170.8
1889 Female, age 72, unknown 157.0
1941 Male, age 53, unknown 152.1
2665 Male, age 74, both hemispheres 150.4
2699 Male, age 18, unknown 143.6
2583 Male, age 75, right hemisphere 140.7
2590 Female, age 75, unknown 139.5
2409 Female, age 72, unknown 134.1
Superior colliculus
nTPM: 132.1
2087 Female, age 72, unknown 150.6
2261 Male, age 18, unknown 148.9
2668 Female, age 75, unknown 143.2
1796 Male, age 53, unknown 142.5
2664 Male, age 75, both hemispheres 139.8
2587 Male, age 74, left hemisphere 127.6
1839 Male, age 51, unknown 126.2
1895 Male, age 76, right hemisphere 119.5
1913 Female, age 42, unknown 116.9
1995 Male, age 72, unknown 105.9
Ventral tegmental area
nTPM: 146.8
1915 Female, age 42, unknown 166.3
2410 Female, age 72, unknown 162.1
2218 Male, age 76, both hemispheres 149.3
1942 Male, age 51, unknown 139.8
2223 Female, age 72, unknown 136.3
2021 Male, age 53, unknown 126.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 72.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.4
Samples: 139

Max nTPM: 107.9
Min nTPM: 48.8
Std nTPM: 11.1
Median nTPM: 71.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 107.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 103.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 101.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 98.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 95.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 94.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 94.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 93.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 91.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 91.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 91.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 136.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 136.0
FF:10158-103A5 76 years, female 136.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 96.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 86.7
Samples: 4

Max nTPM: 110.2
Min nTPM: 66.1
Sample A Female 110.2
Sample B Female 73.8
Sample C Male 96.8
Sample D Male 66.1
Midbrain
nTPM: 96.4
Samples: 4

Max nTPM: 117.8
Min nTPM: 77.8
Sample A Female 107.5
Sample B Female 77.8
Sample C Male 117.8
Sample D Male 82.3
Periaqueductal gray
nTPM: 71.8
Samples: 3

Max nTPM: 78.7
Min nTPM: 64.1
Sample B Female 72.7
Sample C Male 78.7
Sample D Male 64.1
Superior colliculi
nTPM: 89.4
Samples: 4

Max nTPM: 106.4
Min nTPM: 74.2
Sample A Female 93.8
Sample B Female 74.2
Sample C Male 106.4
Sample D Male 83.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 100.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 100.9
Samples: 4

Max nTPM: 107.5
Min nTPM: 92.3
Sample A Male 92.3
Sample B Male 102.6
Sample C Female 107.5
Sample D Female 101.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
112648612 Antisense, RP_110407_02_D01, Mouse strain C57BL/6J (56 days, male) 1.9
97 Antisense, RP_Baylor_103280, Mouse strain C57BL/6J (56 days, male) 0.4
96 Antisense, RP_Baylor_103280, Mouse strain C57BL/6J (56 days, male) 0.2
99 Sense, RPS_Baylor_37100, Mouse strain C57BL/6J (56 days, male) 0.0

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