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CCDC124
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:126.8 nTPM
HPA Brain:77.7 nTPM
GTEx:126.8 nTPM
FANTOM5:33.7 Scaled Tags Per Million
Pig:12.5 nTPM
Mouse:66.2 nTPM
Allen mouse:6.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.7
Sample id Sample description nTPM
Amygdala
nTPM: 76.1
2695 Female, age 67, right hemisphere 88.7
2814 Male, age 76, right hemisphere 86.2
2517 Female, age 94, left hemisphere 70.0
2514 Male, age 75, right hemisphere 68.6
1987 Female, age 91, left hemisphere 66.9
Basal amygdala
nTPM: 75.0
2609 Male, age 75, right hemisphere 86.0
2243 Female, age 91, right hemisphere 76.2
1955 Male, age 76, both hemispheres 76.1
2685 Female, age 94, left hemisphere 73.6
2827 Female, age 67, right hemisphere 71.6
2110 Male, age 80, left hemisphere 66.3
Central amygdala
nTPM: 77.7
2826 Female, age 94, left hemisphere 92.7
1905 Male, age 76, both hemispheres 77.0
2239 Male, age 80, left hemisphere 76.0
2515 Male, age 75, right hemisphere 71.5
2701 Female, age 91, right hemisphere 71.5
Corticomedial amygdala
nTPM: 65.1
2535 Female, age 67, right hemisphere 71.4
2829 Male, age 80, left hemisphere 68.9
2428 Male, age 75, right hemisphere 66.9
2240 Male, age 76, both hemispheres 63.3
2242 Female, age 91, right hemisphere 61.1
2429 Female, age 94, left hemisphere 59.3
Lateral amygdala
nTPM: 74.3
2534 Female, age 94, left hemisphere 83.3
1883 Male, age 76, both hemispheres 79.5
2516 Male, age 75, right hemisphere 74.5
2830 Female, age 67, right hemisphere 73.8
2255 Female, age 91, right hemisphere 67.6
2256 Male, age 80, left hemisphere 67.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 126.8
Samples: 152

Max nTPM: 366.9
Min nTPM: 41.5
Std nTPM: 40.0
Median nTPM: 122.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 366.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 291.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 267.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 237.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 213.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 194.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 193.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 189.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 187.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 185.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 180.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 171.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 169.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 165.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 163.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 158.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 157.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 157.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 156.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 152.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 152.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 151.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 151.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 150.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 149.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 149.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 148.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 148.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 147.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 146.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 146.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 146.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 146.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 145.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 145.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 143.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 143.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 142.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 142.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 141.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 141.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 140.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 140.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 140.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 140.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 139.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 139.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 138.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 137.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 137.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 136.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 136.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 136.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 135.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 135.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 134.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 134.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 134.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 133.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 132.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 131.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 130.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 129.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 129.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 128.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 128.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 127.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 127.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 127.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 127.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 127.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 127.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 126.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 126.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 126.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 123.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 122.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 121.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 120.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 120.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 119.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 119.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 119.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 119.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 119.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 118.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 117.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 117.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 115.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 115.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 115.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 115.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 115.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 114.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 113.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 113.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 111.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 110.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 110.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 110.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 108.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 108.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 108.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 106.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 106.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 105.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 105.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 104.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 104.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 103.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 103.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 102.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 102.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 102.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 102.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 102.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 102.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 101.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 101.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 101.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 101.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 101.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 99.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 99.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 98.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 98.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 98.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 95.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 95.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 91.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 91.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 89.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 88.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 88.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 88.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 88.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 86.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 85.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 84.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 84.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 83.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 81.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 79.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 78.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 78.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 76.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 73.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 70.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 70.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 63.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 62.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 41.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

33.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 33.7
FF:10151-102I7 76 years, female 33.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.5
Pig sample Sample description nTPM
Amygdala
nTPM: 12.5
Samples: 4

Max nTPM: 16.3
Min nTPM: 9.8
Sample A Female 16.3
Sample B Female 11.3
Sample C Male 12.4
Sample D Male 9.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 66.2
Samples: 4

Max nTPM: 85.5
Min nTPM: 57.2
Sample A Male 60.7
Sample B Male 61.3
Sample C Female 85.5
Sample D Female 57.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.9
69174040 Antisense, RP_050329_01_H12, Mouse strain C57BL/6J (56 days, male) 6.9

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