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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

42.599
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:145.9 nTPM
FANTOM5:41.4 Scaled Tags Per Million
Pig:15.2 nTPM
Allen mouse:1.2 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA015979
Medulla oblongata mean intensity 42.599
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 42.599
Raphe magnus nucleus 21.587
Cochlear nucleus 19.355
Lateral paragigantocellular nucleus 34.893
Raphe pallidus nucleus 33.317
Facial nucleus 27.397
Hypoglossal nucleus 16.179
Ambiguus nucleus 22.796
External cuneate nucleus 14.055
Inferior olivary nucleus 20.399
Raphe obscures nucleus 31.969
Dorsal motor nucleus of vagus 37.830

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.9
Sample id Sample description nTPM
Area postrema
nTPM: 44.9
2054 Male, age 76, both hemispheres 88.4
2799 Male, age 61, both hemispheres 29.5
2306 Male, age 80, both hemispheres 16.7
Dorsal medullary reticular nucleus
nTPM: 44.3
2088 Male, age 76, both hemispheres 70.2
2040 Female, age 85, both hemispheres 35.9
2373 Male, age 61, both hemispheres 26.7
Dorsal motor vagal complex
nTPM: 83.3
2844 Male, age 55, unknown 151.7
2813 Female, age 72, unknown 107.4
2643 Male, age 74, both hemispheres 84.0
2807 Female, age 85, both hemispheres 83.8
2133 Female, age 91, both hemispheres 81.1
2000 Male, age 74, unknown 57.1
2797 Male, age 61, both hemispheres 54.1
2185 Male, age 76, both hemispheres 47.5
Gigantocellular reticular nuclei, medullary
nTPM: 32.6
2022 Male, age 76, right hemisphere 69.1
1876 Female, age 85, both hemispheres 55.8
2310 Male, age 80, both hemispheres 28.4
2314 Male, age 61, both hemispheres 23.1
2387 Female, age 91, both hemispheres 11.5
2462 Male, age 74, both hemispheres 7.8
Gigantocellular reticular nuclei, pars
nTPM: 27.1
2084 Female, age 85, both hemispheres 66.4
2336 Male, age 61, both hemispheres 42.6
2330 Male, age 80, both hemispheres 9.5
2706 Male, age 80, both hemispheres 8.9
2168 Male, age 76, both hemispheres 8.3
Inferior olive
nTPM: 22.9
2178 Male, age 61, both hemispheres 32.3
2379 Male, age 80, both hemispheres 24.1
2563 Male, age 74, both hemispheres 23.4
2085 Female, age 85, both hemispheres 21.6
2628 Female, age 91, both hemispheres 13.2
Lateral medullary reticular nucleus
nTPM: 22.5
2190 Female, age 85, both hemispheres 30.2
2044 Male, age 76, both hemispheres 25.9
2374 Male, age 61, both hemispheres 25.7
2852 Male, age 80, both hemispheres 24.5
2804 Female, age 91, both hemispheres 15.5
2305 Male, age 74, both hemispheres 13.3
Medial olivary nucleus
nTPM: 19.6
2851 Male, age 80, both hemispheres 22.0
1943 Male, age 61, both hemispheres 20.0
2138 Female, age 91, both hemispheres 19.9
1962 Male, age 76, both hemispheres 16.5
Medial vestibular nucleus
nTPM: 47.1
2743 Female, age 85, both hemispheres 98.4
2134 Male, age 76, both hemispheres 43.7
2801 Male, age 74, both hemispheres 40.0
2624 Male, age 61, both hemispheres 37.4
2803 Female, age 91, both hemispheres 36.2
2093 Male, age 80, both hemispheres 26.8
Motor hypoglossal nucleus
nTPM: 66.7
2277 Male, age 76, both hemispheres 149.7
2182 Male, age 80, both hemispheres 64.0
2461 Male, age 61, both hemispheres 58.6
2132 Female, age 85, both hemispheres 41.3
2125 Female, age 91, both hemispheres 19.8
Nucleus ambiguus
nTPM: 53.7
2096 Female, age 85, both hemispheres 87.6
2071 Male, age 76, both hemispheres 19.8
Nucleus cuneatus
nTPM: 35.6
2562 Male, age 61, both hemispheres 88.3
2131 Male, age 76, both hemispheres 63.1
2381 Male, age 80, both hemispheres 46.8
2805 Female, age 91, both hemispheres 29.5
2376 Male, age 61, both hemispheres 24.6
2808 Female, age 85, both hemispheres 21.4
2564 Male, age 74, both hemispheres 16.6
2380 Male, age 80, both hemispheres 15.6
2100 Male, age 76, both hemispheres 14.9
Nucleus gracilis
nTPM: 33.4
2299 Female, age 85, both hemispheres 57.6
2382 Male, age 80, both hemispheres 21.9
2627 Male, age 74, both hemispheres 20.5
Nucleus raphe obscurus
nTPM: 22.6
2800 Male, age 61, midline 25.1
2845 Female, age 85, midline 24.8
2142 Male, age 76, midline 18.0
Nucleus raphe pallidus
nTPM: 28.2
2183 Male, age 80, midline 53.7
2145 Male, age 76, midline 16.0
1924 Male, age 61, midline 15.0
Nucleus tractus solitarii
nTPM: 145.9
2656 Male, age 76, both hemispheres 209.8
2191 Female, age 85, both hemispheres 174.5
2307 Male, age 80, both hemispheres 153.6
2144 Female, age 91, right hemisphere 45.7
Parvicellular reticular nuclei
nTPM: 22.6
2119 Male, age 80, both hemispheres 38.5
2095 Male, age 76, both hemispheres 21.9
2558 Male, age 74, both hemispheres 7.2
Parvicellular reticular nuclei, medullary
nTPM: 85.1
2181 Male, age 80, left hemisphere 111.9
2189 Female, age 91, both hemispheres 82.5
2091 Female, age 85, both hemispheres 60.8
Peritrigeminal nucleus
nTPM: 28.1
2067 Female, age 85, both hemispheres 41.9
2179 Male, age 61, both hemispheres 30.4
2136 Male, age 76, both hemispheres 12.1
Prepositus hypoglossal nucleus
nTPM: 56.5
2855 Female, age 85, right hemisphere 57.0
2086 Male, age 80, both hemispheres 56.0
Spinal trigeminal nucleus, caudal
nTPM: 55.3
2642 Male, age 74, both hemispheres 80.2
2308 Male, age 80, both hemispheres 61.1
2447 Male, age 76, both hemispheres 57.4
2390 Female, age 91, both hemispheres 41.1
2312 Male, age 61, both hemispheres 37.1
Spinal trigeminal nucleus, interpolar
nTPM: 47.0
2386 Female, age 85, both hemispheres 86.0
2033 Male, age 80, both hemispheres 61.3
2389 Female, age 91, both hemispheres 35.9
2625 Male, age 61, both hemispheres 32.3
2066 Male, age 76, right hemisphere 19.4
Spinal vestibular nucleus
nTPM: 38.1
2780 Male, age 80, both hemispheres 61.3
2806 Female, age 85, both hemispheres 46.9
2186 Female, age 91, both hemispheres 37.2
2384 Male, age 74, both hemispheres 33.5
2796 Male, age 61, both hemispheres 27.2
2748 Male, age 76, both hemispheres 22.2
Superior vestibular nucleus
nTPM: 80.2
2383 Male, age 74, both hemispheres 110.4
2015 Male, age 80, both hemispheres 65.3
2061 Male, age 76, both hemispheres 65.0
Ventral medullary reticular nucleus
nTPM: 50.5
2060 Male, age 76, both hemispheres 70.9
2372 Male, age 61, both hemispheres 30.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 28.3
2741 Female, age 85, both hemispheres 51.4
2180 Male, age 61, both hemispheres 42.4
1986 Male, age 76, both hemispheres 20.4
2118 Male, age 80, both hemispheres 16.6
2302 Female, age 91, both hemispheres 10.9

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 41.4
FF:10155-103A2 76 years, female 44.7
FF:10038-101F2 18-64 years, mixed 39.9
FF:10174-103C3 60 years, female 39.5

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 15.2
Samples: 4

Max nTPM: 26.2
Min nTPM: 4.2
Sample A Female 26.2
Sample B Female 16.7
Sample C Male 13.6
Sample D Male 4.2

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 1.2
74735337 Antisense, RP_060302_01_E02, Mouse strain C57BL/6J (56 days, male) 1.6
70795349 Antisense, RP_050712_01_D04, Mouse strain C57BL/6J (56 days, male) 1.5
71924504 Antisense, RP_050630_03_D11, Mouse strain C57BL/6J (56 days, male) 1.4
72338724 Antisense, RP_051101_01_C06, Mouse strain C57BL/6J (56 days, male) 1.3
75081206 Antisense, RP_060315_03_C11, Mouse strain C57BL/6J (56 days, male) 1.1
70722898 Antisense, RP_050630_03_D11, Mouse strain C57BL/6J (56 days, male) 0.9
70298477 Antisense, RP_050602_02_H03, Mouse strain C57BL/6J (56 days, male) 0.4

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