MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:130.8 nTPM
HPA Brain:72.0 nTPM
GTEx:130.8 nTPM
FANTOM5:171.1 Scaled Tags Per Million
Pig:125.7 nTPM
Mouse:147.6 nTPM
Allen mouse:7.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 72.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.4
2411 Female, age 72, unknown 77.1
1870 Female, age 42, unknown 71.2
2019 Male, age 18, unknown 62.6
2828 Female, age 72, unknown 61.3
1827 Male, age 72, unknown 59.4
1833 Male, age 53, unknown 57.7
1830 Male, age 51, unknown 55.9
2219 Male, age 76, both hemispheres 51.2
2586 Male, age 75, left hemisphere 45.9
2666 Male, age 74, left hemisphere 41.5
Dorsal raphe nucleus
nTPM: 72.0
2298 Female, age 72, unknown 94.0
2750 Male, age 76, both hemispheres 74.2
2047 Male, age 72, unknown 65.2
1828 Male, age 53, unknown 64.1
2016 Female, age 72, unknown 62.4
Inferior colliculus
nTPM: 65.0
2097 Female, age 72, unknown 82.7
1890 Male, age 53, unknown 64.3
1848 Female, age 42, unknown 61.9
2849 Male, age 72, unknown 51.0
Median raphe nucleus
nTPM: 60.1
2220 Male, age 76, midline 60.1
Periaquaductal grey, anterior
nTPM: 66.5
2502 Female, age 75, unknown 69.7
1947 Male, age 18, unknown 68.3
1795 Male, age 51, unknown 61.5
Periaquaductal grey, dorsal
nTPM: 59.0
1840 Male, age 53, unknown 63.9
2464 Female, age 72, unknown 60.0
2850 Male, age 76, both hemispheres 57.9
1831 Male, age 72, unknown 54.1
Periaquaductal grey, lateral
nTPM: 62.8
2140 Male, age 76, both hemispheres 68.4
2053 Male, age 18, unknown 63.4
2272 Male, age 74, both hemispheres 56.5
Pretectal area
nTPM: 65.2
2224 Female, age 72, unknown 76.6
2316 Male, age 76, right hemisphere 69.6
2007 Male, age 72, unknown 68.1
1817 Female, age 42, unknown 67.0
1944 Female, age 72, unknown 65.9
2667 Female, age 75, unknown 65.8
1816 Male, age 51, unknown 65.6
2273 Male, age 74, both hemispheres 64.8
1815 Male, age 53, unknown 62.3
2825 Male, age 18, unknown 62.3
2407 Male, age 75, both hemispheres 49.2
Red nucleus
nTPM: 59.9
1821 Female, age 72, unknown 72.9
2503 Female, age 72, unknown 68.8
1904 Male, age 53, unknown 64.6
1865 Male, age 51, unknown 64.4
1954 Female, age 42, unknown 63.5
2785 Male, age 18, unknown 63.1
2823 Male, age 76, right hemisphere 62.5
2769 Male, age 72, unknown 59.8
2227 Male, age 72, unknown 59.3
2725 Female, age 75, unknown 55.1
2584 Male, age 75, left hemisphere 42.6
2588 Male, age 74, left hemisphere 42.1
Substantia nigra
nTPM: 68.7
2241 Male, age 72, unknown 90.8
1851 Male, age 51, unknown 78.3
2409 Female, age 72, unknown 75.5
1916 Female, age 42, unknown 75.4
1889 Female, age 72, unknown 69.7
2665 Male, age 74, both hemispheres 66.9
1941 Male, age 53, unknown 62.4
2590 Female, age 75, unknown 58.9
2699 Male, age 18, unknown 58.2
2583 Male, age 75, right hemisphere 51.0
Superior colliculus
nTPM: 60.5
2587 Male, age 74, left hemisphere 69.3
2668 Female, age 75, unknown 69.2
1895 Male, age 76, right hemisphere 67.2
2087 Female, age 72, unknown 64.2
1913 Female, age 42, unknown 62.8
1796 Male, age 53, unknown 62.5
1995 Male, age 72, unknown 60.4
2261 Male, age 18, unknown 59.8
1839 Male, age 51, unknown 53.8
2664 Male, age 75, both hemispheres 35.5
Ventral tegmental area
nTPM: 68.1
2410 Female, age 72, unknown 75.2
1915 Female, age 42, unknown 72.1
2021 Male, age 53, unknown 68.2
1942 Male, age 51, unknown 65.7
2218 Male, age 76, both hemispheres 64.7
2223 Female, age 72, unknown 62.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 130.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 130.8
Samples: 139

Max nTPM: 304.0
Min nTPM: 95.0
Std nTPM: 29.9
Median nTPM: 123.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 304.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 252.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 210.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 207.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 199.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 192.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 189.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 187.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 185.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 180.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 174.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 171.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 171.1
FF:10158-103A5 76 years, female 171.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 125.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 125.7
Samples: 4

Max nTPM: 174.9
Min nTPM: 90.3
Sample A Female 174.9
Sample B Female 100.7
Sample C Male 136.8
Sample D Male 90.3
Midbrain
nTPM: 125.2
Samples: 4

Max nTPM: 162.4
Min nTPM: 109.6
Sample A Female 162.4
Sample B Female 111.1
Sample C Male 117.6
Sample D Male 109.6
Periaqueductal gray
nTPM: 105.1
Samples: 3

Max nTPM: 124.9
Min nTPM: 87.8
Sample B Female 102.7
Sample C Male 124.9
Sample D Male 87.8
Superior colliculi
nTPM: 123.8
Samples: 4

Max nTPM: 145.6
Min nTPM: 107.9
Sample A Female 145.6
Sample B Female 108.4
Sample C Male 133.4
Sample D Male 107.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 147.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 147.6
Samples: 4

Max nTPM: 153.5
Min nTPM: 136.7
Sample A Male 153.5
Sample B Male 147.6
Sample C Female 136.7
Sample D Female 152.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
74059243 Antisense, RP_051121_03_C07, Mouse strain C57BL/6J (56 days, male) 7.6

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