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CDKL5
HPA
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  • CDKL5
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CDKL5
Synonyms CFAP247, EIEE2, STK9
Gene descriptioni

Full gene name according to HGNC.

Cyclin dependent kinase like 5
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Enzymes
Human disease related genes
Plasma proteins
Potential drug targets
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome X
Cytoband p22.13
Chromosome location (bp) 18425583 - 18653629
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

10
Ensembl ENSG00000008086 (version 109)
Entrez gene 6792
HGNC HGNC:11411
UniProt O76039 (UniProt - Evidence at protein level)
neXtProt NX_O76039
GeneCards CDKL5
Antibodypedia CDKL5 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Mediates phosphorylation of MECP2 1, 2. May regulate ciliogenesis 3.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Kinase, Serine/threonine-protein kinase, Transferase
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

ATP-binding, Nucleotide-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene is a member of Ser/Thr protein kinase family and encodes a phosphorylated protein with protein kinase activity. Mutations in this gene have been associated with X-linked infantile spasm syndrome (ISSX), also known as X-linked West syndrome, and Rett syndrome (RTT). Alternate transcriptional splice variants have been characterized. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CDKL5-201
ENSP00000369325
ENST00000379989
O76039
[Direct mapping] Cyclin-dependent kinase-like 5
Show all
Enzymes
   ENZYME proteins
   Transferases
   Kinases
   CMGC Ser/Thr protein kinases
   MEMSAT-SVM predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0001764 [neuron migration]
GO:0004672 [protein kinase activity]
GO:0004674 [protein serine/threonine kinase activity]
GO:0004693 [cyclin-dependent protein serine/threonine kinase activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005813 [centrosome]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0006468 [protein phosphorylation]
GO:0016301 [kinase activity]
GO:0016310 [phosphorylation]
GO:0016740 [transferase activity]
GO:0031267 [small GTPase binding]
GO:0032587 [ruffle membrane]
GO:0032839 [dendrite cytoplasm]
GO:0036064 [ciliary basal body]
GO:0042995 [cell projection]
GO:0043547 [positive regulation of GTPase activity]
GO:0044294 [dendritic growth cone]
GO:0045773 [positive regulation of axon extension]
GO:0046777 [protein autophosphorylation]
GO:0050773 [regulation of dendrite development]
GO:0050775 [positive regulation of dendrite morphogenesis]
GO:0050804 [modulation of chemical synaptic transmission]
GO:0051726 [regulation of cell cycle]
GO:0097542 [ciliary tip]
GO:0098978 [glutamatergic synapse]
GO:0099175 [regulation of postsynapse organization]
GO:0106310 [protein serine kinase activity]
GO:1902017 [regulation of cilium assembly]
Show all
1030 aa
115.5 kDa
No 0
CDKL5-202
ENSP00000369332
ENST00000379996
O76039
[Direct mapping] Cyclin-dependent kinase-like 5
Show all
Enzymes
   ENZYME proteins
   Transferases
   Kinases
   CMGC Ser/Thr protein kinases
   MEMSAT-SVM predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0001764 [neuron migration]
GO:0004672 [protein kinase activity]
GO:0004674 [protein serine/threonine kinase activity]
GO:0004693 [cyclin-dependent protein serine/threonine kinase activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005813 [centrosome]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0006468 [protein phosphorylation]
GO:0016301 [kinase activity]
GO:0016310 [phosphorylation]
GO:0016740 [transferase activity]
GO:0031267 [small GTPase binding]
GO:0032587 [ruffle membrane]
GO:0032839 [dendrite cytoplasm]
GO:0036064 [ciliary basal body]
GO:0042995 [cell projection]
GO:0043547 [positive regulation of GTPase activity]
GO:0044294 [dendritic growth cone]
GO:0045773 [positive regulation of axon extension]
GO:0046777 [protein autophosphorylation]
GO:0050773 [regulation of dendrite development]
GO:0050775 [positive regulation of dendrite morphogenesis]
GO:0050804 [modulation of chemical synaptic transmission]
GO:0051726 [regulation of cell cycle]
GO:0097542 [ciliary tip]
GO:0098978 [glutamatergic synapse]
GO:0099175 [regulation of postsynapse organization]
GO:0106310 [protein serine kinase activity]
GO:1902017 [regulation of cilium assembly]
Show all
1030 aa
115.5 kDa
No 0
CDKL5-203
ENSP00000485184
ENST00000463994
A0A096LNR9
[Direct mapping] Cyclin-dependent kinase-like 5
Show all
   MEMSAT-SVM predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Show all
GO:0000166 [nucleotide binding]
GO:0004672 [protein kinase activity]
GO:0005524 [ATP binding]
GO:0005654 [nucleoplasm]
GO:0006468 [protein phosphorylation]
Show all
784 aa
88.2 kDa
No 0
CDKL5-204
ENSP00000485581
ENST00000623364
A0A096LPG3
[Direct mapping] Cyclin-dependent kinase-like 5
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Show all
GO:0000166 [nucleotide binding]
GO:0004672 [protein kinase activity]
GO:0005524 [ATP binding]
GO:0006468 [protein phosphorylation]
Show all
60 aa
6.8 kDa
No 0
CDKL5-205
ENSP00000485244
ENST00000623535
O76039
[Direct mapping] Cyclin-dependent kinase-like 5
Show all
Enzymes
   ENZYME proteins
   Transferases
   Kinases
   CMGC Ser/Thr protein kinases
   MEMSAT-SVM predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000166 [nucleotide binding]
GO:0001764 [neuron migration]
GO:0004672 [protein kinase activity]
GO:0004674 [protein serine/threonine kinase activity]
GO:0004693 [cyclin-dependent protein serine/threonine kinase activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005813 [centrosome]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0006468 [protein phosphorylation]
GO:0016301 [kinase activity]
GO:0016310 [phosphorylation]
GO:0016740 [transferase activity]
GO:0031267 [small GTPase binding]
GO:0032587 [ruffle membrane]
GO:0032839 [dendrite cytoplasm]
GO:0036064 [ciliary basal body]
GO:0042995 [cell projection]
GO:0043547 [positive regulation of GTPase activity]
GO:0044294 [dendritic growth cone]
GO:0045773 [positive regulation of axon extension]
GO:0046777 [protein autophosphorylation]
GO:0050773 [regulation of dendrite development]
GO:0050775 [positive regulation of dendrite morphogenesis]
GO:0050804 [modulation of chemical synaptic transmission]
GO:0051726 [regulation of cell cycle]
GO:0097542 [ciliary tip]
GO:0098978 [glutamatergic synapse]
GO:0099175 [regulation of postsynapse organization]
GO:0106310 [protein serine kinase activity]
GO:1902017 [regulation of cilium assembly]
Show all
960 aa
107.5 kDa
No 0
CDKL5-207
ENSP00000485359
ENST00000624700
A0A096LP32
[Direct mapping] Cyclin-dependent kinase-like 5
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Show all
GO:0000166 [nucleotide binding]
GO:0004672 [protein kinase activity]
GO:0005524 [ATP binding]
GO:0006468 [protein phosphorylation]
Show all
68 aa
7.8 kDa
No 0
CDKL5-208
ENSP00000485625
ENST00000624953
A0A096LPI4
[Direct mapping] Cyclin-dependent kinase-like 5
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Show all
17 aa
1.9 kDa
No 0
CDKL5-209
ENSP00000490170
ENST00000635828
A0A1B0GUM4
[Direct mapping] Cyclin-dependent kinase-like 5
Show all
   MEMSAT-SVM predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Show all
GO:0000166 [nucleotide binding]
GO:0004672 [protein kinase activity]
GO:0005524 [ATP binding]
GO:0005654 [nucleoplasm]
GO:0006468 [protein phosphorylation]
Show all
881 aa
98.9 kDa
No 0
CDKL5-211
ENSP00000489879
ENST00000637881
A0A1B0GTX4
[Direct mapping] Cyclin-dependent kinase-like 5
Show all
   MEMSAT-SVM predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Show all
GO:0000166 [nucleotide binding]
GO:0004672 [protein kinase activity]
GO:0004674 [protein serine/threonine kinase activity]
GO:0005524 [ATP binding]
GO:0006468 [protein phosphorylation]
Show all
471 aa
53.5 kDa
No 0
CDKL5-213
ENSP00000501174
ENST00000674046
A0A669KBC2
[Direct mapping] Cyclin-dependent kinase-like 5
Show all
   MEMSAT-SVM predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Epilepsy
Show all
GO:0000166 [nucleotide binding]
GO:0004672 [protein kinase activity]
GO:0005524 [ATP binding]
GO:0005654 [nucleoplasm]
GO:0006468 [protein phosphorylation]
Show all
1001 aa
112 kDa
No 0

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