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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:196.6 nTPM
HPA Brain:78.5 nTPM
GTEx:196.6 nTPM
FANTOM5:193.3 Scaled Tags Per Million
Pig:48.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 69.2
1981 Female, age 72, midline 98.6
2048 Male, age 55, midline 86.5
2816 Male, age 47, midline 69.8
2194 Female, age 79, both hemispheres 45.6
2565 Male, age 75, midline 45.5
Cervical spinal cord, dorsal horn
nTPM: 78.5
2296 Male, age 66, both hemispheres 152.7
2173 Female, age 72, unknown 118.4
2069 Male, age 47, both hemispheres 74.9
1877 Male, age 55, unknown 59.8
2721 Male, age 90, both hemispheres 32.8
2297 Male, age 75, both hemispheres 32.6
Cervical spinal cord, ventral horn
nTPM: 73.4
2098 Female, age 72, unknown 123.8
2480 Male, age 75, both hemispheres 74.2
2068 Male, age 55, unknown 66.0
2295 Male, age 66, both hemispheres 63.3
2809 Male, age 90, both hemispheres 63.1
2820 Female, age 79, both hemispheres 50.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 196.6
Samples: 159

Max nTPM: 482.4
Min nTPM: 46.3
Std nTPM: 79.9
Median nTPM: 190.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 482.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 405.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 376.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 369.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 369.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 353.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 350.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 345.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 328.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 322.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 320.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 315.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 305.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 301.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 297.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 297.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 297.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 297.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 291.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 290.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 289.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 288.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 286.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 283.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 282.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 278.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 275.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 270.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 268.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 268.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 266.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 265.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 264.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 262.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 260.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 257.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 257.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 256.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 256.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 255.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 253.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 250.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 249.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 246.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 244.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 242.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 241.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 237.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 235.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 235.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 230.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 230.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 223.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 221.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 220.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 218.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 218.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 215.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 215.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 212.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 212.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 210.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 210.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 209.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 209.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 208.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 206.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 205.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 204.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 203.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 202.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 202.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 198.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 197.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 195.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 194.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 194.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 194.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 193.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 190.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 187.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 186.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 185.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 182.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 181.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 180.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 180.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 178.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 174.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 173.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 172.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 172.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 172.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 171.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 171.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 171.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 171.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 168.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 165.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 163.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 163.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 162.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 162.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 162.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 162.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 162.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 161.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 160.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 158.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 156.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 155.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 154.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 153.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 145.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 145.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 142.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 142.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 141.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 138.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 138.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 138.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 138.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 137.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 137.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 137.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 137.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 133.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 129.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 123.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 119.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 119.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 118.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 114.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 114.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 113.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 109.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 107.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 104.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 103.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 97.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 96.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 94.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 92.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 90.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 86.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 84.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 83.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 82.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 82.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 79.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 78.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 76.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 71.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 69.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 67.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 56.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 54.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 52.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 46.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

193.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 193.3
FF:10181-103D1 60 years, female 199.4
FF:10159-103A6 76 years, female 187.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 40.9
Samples: 4

Max nTPM: 46.6
Min nTPM: 38.1
Sample A Female 38.7
Sample B Female 46.6
Sample C Male 38.1
Sample D Male 40.1
Ventral spinal cord
nTPM: 48.3
Samples: 4

Max nTPM: 64.0
Min nTPM: 39.1
Sample A Female 46.5
Sample B Female 43.4
Sample C Male 39.1
Sample D Male 64.0

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