MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.7 nTPM
HPA Brain:62.9 nTPM
GTEx:61.7 nTPM
FANTOM5:138.4 Scaled Tags Per Million
Pig:30.8 nTPM
Mouse:77.8 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 62.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.6
1870 Female, age 42, unknown 74.5
2411 Female, age 72, unknown 64.8
2019 Male, age 18, unknown 64.2
1830 Male, age 51, unknown 63.5
1833 Male, age 53, unknown 58.0
2828 Female, age 72, unknown 42.8
1827 Male, age 72, unknown 31.5
2666 Male, age 74, left hemisphere 30.4
2586 Male, age 75, left hemisphere 28.2
2219 Male, age 76, both hemispheres 28.0
Dorsal raphe nucleus
nTPM: 44.5
2750 Male, age 76, both hemispheres 67.7
2016 Female, age 72, unknown 44.7
1828 Male, age 53, unknown 41.0
2298 Female, age 72, unknown 36.4
2047 Male, age 72, unknown 32.6
Inferior colliculus
nTPM: 35.1
1848 Female, age 42, unknown 37.1
1890 Male, age 53, unknown 37.1
2097 Female, age 72, unknown 36.0
2849 Male, age 72, unknown 30.2
Median raphe nucleus
nTPM: 41.9
2220 Male, age 76, midline 41.9
Periaquaductal grey, anterior
nTPM: 34.9
2502 Female, age 75, unknown 41.1
1947 Male, age 18, unknown 36.6
1795 Male, age 51, unknown 27.1
Periaquaductal grey, dorsal
nTPM: 33.9
2850 Male, age 76, both hemispheres 39.7
2464 Female, age 72, unknown 39.4
1831 Male, age 72, unknown 32.5
1840 Male, age 53, unknown 24.0
Periaquaductal grey, lateral
nTPM: 37.9
2272 Male, age 74, both hemispheres 38.6
2140 Male, age 76, both hemispheres 38.2
2053 Male, age 18, unknown 36.9
Pretectal area
nTPM: 34.1
2273 Male, age 74, both hemispheres 48.8
1815 Male, age 53, unknown 40.5
2316 Male, age 76, right hemisphere 39.0
2667 Female, age 75, unknown 37.6
1817 Female, age 42, unknown 35.3
2825 Male, age 18, unknown 34.5
2224 Female, age 72, unknown 33.8
2407 Male, age 75, both hemispheres 30.7
2007 Male, age 72, unknown 30.5
1944 Female, age 72, unknown 23.9
1816 Male, age 51, unknown 20.0
Red nucleus
nTPM: 62.9
1821 Female, age 72, unknown 85.8
1865 Male, age 51, unknown 82.6
1904 Male, age 53, unknown 80.6
1954 Female, age 42, unknown 72.2
2769 Male, age 72, unknown 71.8
2227 Male, age 72, unknown 69.2
2823 Male, age 76, right hemisphere 66.9
2785 Male, age 18, unknown 57.9
2503 Female, age 72, unknown 55.1
2725 Female, age 75, unknown 39.6
2584 Male, age 75, left hemisphere 38.8
2588 Male, age 74, left hemisphere 34.4
Substantia nigra
nTPM: 38.8
2241 Male, age 72, unknown 47.1
2409 Female, age 72, unknown 43.7
1889 Female, age 72, unknown 43.2
1851 Male, age 51, unknown 42.2
2699 Male, age 18, unknown 40.7
2590 Female, age 75, unknown 39.6
2583 Male, age 75, right hemisphere 37.5
1941 Male, age 53, unknown 37.1
1916 Female, age 42, unknown 31.7
2665 Male, age 74, both hemispheres 25.0
Superior colliculus
nTPM: 39.5
1913 Female, age 42, unknown 63.5
1995 Male, age 72, unknown 54.9
2587 Male, age 74, left hemisphere 49.3
2668 Female, age 75, unknown 41.3
1839 Male, age 51, unknown 39.5
1895 Male, age 76, right hemisphere 36.8
1796 Male, age 53, unknown 30.9
2087 Female, age 72, unknown 29.2
2664 Male, age 75, both hemispheres 25.8
2261 Male, age 18, unknown 24.2
Ventral tegmental area
nTPM: 49.2
2223 Female, age 72, unknown 79.5
2410 Female, age 72, unknown 52.8
1942 Male, age 51, unknown 44.7
2218 Male, age 76, both hemispheres 43.3
2021 Male, age 53, unknown 39.0
1915 Female, age 42, unknown 36.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 61.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.7
Samples: 139

Max nTPM: 148.8
Min nTPM: 21.5
Std nTPM: 24.6
Median nTPM: 56.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 148.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 147.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 144.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 138.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 132.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 123.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 118.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 117.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 115.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 112.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 106.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 138.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.4
FF:10158-103A5 76 years, female 138.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.6
Samples: 4

Max nTPM: 31.3
Min nTPM: 19.6
Sample A Female 25.3
Sample B Female 19.6
Sample C Male 22.0
Sample D Male 31.3
Midbrain
nTPM: 30.8
Samples: 4

Max nTPM: 66.8
Min nTPM: 15.0
Sample A Female 66.8
Sample B Female 23.2
Sample C Male 18.1
Sample D Male 15.0
Periaqueductal gray
nTPM: 22.0
Samples: 3

Max nTPM: 23.4
Min nTPM: 20.4
Sample B Female 22.1
Sample C Male 20.4
Sample D Male 23.4
Superior colliculi
nTPM: 19.3
Samples: 4

Max nTPM: 21.8
Min nTPM: 14.9
Sample A Female 19.3
Sample B Female 14.9
Sample C Male 21.8
Sample D Male 21.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 77.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.8
Samples: 4

Max nTPM: 79.5
Min nTPM: 75.2
Sample A Male 75.2
Sample B Male 77.3
Sample C Female 79.5
Sample D Female 79.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
69838712 Antisense, RP_050321_01_A10, Mouse strain C57BL/6J (56 days, male) 2.2
75233089 Antisense, RP_060220_02_G06, Mouse strain C57BL/6J (56 days, male) 1.7

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