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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:79.7 nTPM
HPA Brain:283.2 nTPM
GTEx:79.7 nTPM
FANTOM5:119.5 Scaled Tags Per Million
Pig:244.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

283.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 283.2
2565 Male, age 75, midline 323.5
2048 Male, age 55, midline 307.8
2816 Male, age 47, midline 294.6
1981 Female, age 72, midline 246.4
2194 Female, age 79, both hemispheres 243.6
Cervical spinal cord, dorsal horn
nTPM: 221.3
2296 Male, age 66, both hemispheres 278.1
2173 Female, age 72, unknown 237.7
1877 Male, age 55, unknown 218.2
2721 Male, age 90, both hemispheres 217.9
2069 Male, age 47, both hemispheres 198.2
2297 Male, age 75, both hemispheres 177.7
Cervical spinal cord, ventral horn
nTPM: 259.2
2809 Male, age 90, both hemispheres 291.3
2480 Male, age 75, both hemispheres 285.0
2295 Male, age 66, both hemispheres 269.5
2098 Female, age 72, unknown 251.8
2820 Female, age 79, both hemispheres 231.7
2068 Male, age 55, unknown 226.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 79.7
Samples: 159

Max nTPM: 138.5
Min nTPM: 27.4
Std nTPM: 22.0
Median nTPM: 81.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 138.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 126.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 123.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 120.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 119.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 116.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 115.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 114.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 113.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 112.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 110.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 110.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 110.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 108.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 107.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 107.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 107.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 105.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 105.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 104.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 104.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 103.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 103.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 102.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 101.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 100.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 99.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 98.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 98.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 98.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 98.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 97.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 97.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 96.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 96.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 96.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 96.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 95.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 95.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 94.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 94.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 93.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 93.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 93.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 92.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 92.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 91.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 91.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 91.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 90.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 90.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 90.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 90.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 90.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 89.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 89.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 89.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 88.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 88.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 88.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 88.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 87.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 87.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 87.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 86.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 86.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 86.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 86.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 85.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 85.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 84.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 84.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 84.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 83.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 83.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 82.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 82.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 82.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 81.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 81.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 80.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 80.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 80.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 80.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 80.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 79.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 79.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 79.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 79.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 77.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 77.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 77.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 77.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 77.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 76.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 76.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 75.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 75.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 74.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 74.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 74.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 74.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 74.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 74.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 73.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 73.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 72.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 72.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 71.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 70.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 70.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 68.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 68.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 68.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 67.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 67.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 65.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 65.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 65.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 64.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 64.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 64.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 63.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 63.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 63.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 61.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 60.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 60.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 60.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 59.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 57.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 57.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 55.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 54.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 54.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 54.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 54.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 53.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 51.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 51.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 50.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 50.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 49.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 47.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 45.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 44.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 43.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 43.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 42.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 41.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 39.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 37.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 37.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 35.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 34.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 34.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 33.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 29.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 27.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

119.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 119.5
FF:10181-103D1 60 years, female 126.3
FF:10159-103A6 76 years, female 112.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

244.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 193.9
Samples: 4

Max nTPM: 216.2
Min nTPM: 180.7
Sample A Female 188.7
Sample B Female 180.7
Sample C Male 189.9
Sample D Male 216.2
Ventral spinal cord
nTPM: 244.9
Samples: 4

Max nTPM: 278.7
Min nTPM: 207.4
Sample A Female 278.7
Sample B Female 207.4
Sample C Male 235.8
Sample D Male 257.5

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