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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:58.8 nTPM
HPA Brain:248.0 nTPM
GTEx:58.8 nTPM
FANTOM5:149.2 Scaled Tags Per Million
Pig:125.4 nTPM
Mouse:33.5 nTPM
Allen mouse:4.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

248.0
Sample id Sample description nTPM
Amygdala
nTPM: 248.0
2695 Female, age 67, right hemisphere 359.7
2514 Male, age 75, right hemisphere 239.6
1987 Female, age 91, left hemisphere 219.1
2517 Female, age 94, left hemisphere 218.1
2814 Male, age 76, right hemisphere 203.2
Basal amygdala
nTPM: 213.7
2609 Male, age 75, right hemisphere 298.2
2827 Female, age 67, right hemisphere 258.2
2243 Female, age 91, right hemisphere 213.9
2685 Female, age 94, left hemisphere 201.2
2110 Male, age 80, left hemisphere 172.5
1955 Male, age 76, both hemispheres 138.4
Central amygdala
nTPM: 216.7
2826 Female, age 94, left hemisphere 275.9
2515 Male, age 75, right hemisphere 262.0
2239 Male, age 80, left hemisphere 195.3
2701 Female, age 91, right hemisphere 185.3
1905 Male, age 76, both hemispheres 165.0
Corticomedial amygdala
nTPM: 187.9
2242 Female, age 91, right hemisphere 233.1
2428 Male, age 75, right hemisphere 222.3
2829 Male, age 80, left hemisphere 204.0
2535 Female, age 67, right hemisphere 197.7
2429 Female, age 94, left hemisphere 162.6
2240 Male, age 76, both hemispheres 107.5
Lateral amygdala
nTPM: 234.2
2830 Female, age 67, right hemisphere 305.6
2516 Male, age 75, right hemisphere 301.9
2255 Female, age 91, right hemisphere 214.9
2534 Female, age 94, left hemisphere 207.8
2256 Male, age 80, left hemisphere 206.0
1883 Male, age 76, both hemispheres 169.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 58.8
Samples: 152

Max nTPM: 117.4
Min nTPM: 12.3
Std nTPM: 15.3
Median nTPM: 57.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 117.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 102.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 98.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 88.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 87.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 85.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 84.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 83.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 83.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 82.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 81.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 80.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 78.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 78.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 78.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 77.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 77.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 77.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 77.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 76.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 75.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 75.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 75.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 74.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 74.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 73.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 73.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 73.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 72.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 71.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 71.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 71.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 70.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 70.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 70.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 69.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 68.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 67.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 67.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 67.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 67.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 66.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 66.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 65.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 65.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 65.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 64.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 64.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 64.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 64.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 63.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 63.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 63.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 62.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 62.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 62.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 62.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 61.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 61.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 61.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 61.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 61.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 61.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 60.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 60.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 59.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 59.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 59.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 59.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 59.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 58.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 58.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 58.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 58.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 58.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 58.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 57.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 57.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 57.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 56.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 56.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 56.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 56.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 55.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 55.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 55.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 55.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 55.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 54.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 54.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 54.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 54.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 54.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 54.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 54.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 53.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 53.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 53.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 53.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 52.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 52.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 52.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 52.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 51.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 51.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 51.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 51.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 51.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 50.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 50.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 50.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 50.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 50.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 50.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 49.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 49.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 48.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 48.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 47.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 47.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 47.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 47.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 47.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 47.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 46.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 45.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 45.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 44.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 44.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 44.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 43.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 43.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 42.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 42.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 41.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 40.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 40.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 40.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 38.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 37.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 37.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 36.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 35.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 34.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 34.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 33.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 32.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 32.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 30.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 30.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 28.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 12.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

149.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 149.2
FF:10151-102I7 76 years, female 149.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.4
Pig sample Sample description nTPM
Amygdala
nTPM: 125.4
Samples: 4

Max nTPM: 151.5
Min nTPM: 103.3
Sample A Female 151.5
Sample B Female 103.3
Sample C Male 110.5
Sample D Male 136.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 33.5
Samples: 4

Max nTPM: 45.2
Min nTPM: 28.9
Sample A Male 29.5
Sample B Male 30.4
Sample C Female 45.2
Sample D Female 28.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.3
77620379 Antisense, RP_070205_01_D12, Mouse strain C57BL/6J (56 days, male) 6.2
77413698 Antisense, RP_070205_01_D12, Mouse strain C57BL/6J (56 days, male) 4.3
2424 Antisense, RP_Baylor_102930, Mouse strain C57BL/6J (56 days, male) 2.4
2423 Antisense, RP_Baylor_102930, Mouse strain C57BL/6J (56 days, male) 0.3

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