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RPS20
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  • RPS20
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:904.7 nTPM
FANTOM5:351.4 Scaled Tags Per Million
Pig:509.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003570
Glial cells Low
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

904.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 904.7
Samples: 246

Max nTPM: 2903.1
Min nTPM: 399.9
Std nTPM: 302.7
Median nTPM: 844.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2903.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2252.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1991.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1908.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1834.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1718.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1706.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1659.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1551.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1535.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1475.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1428.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1419.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1415.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1414.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1366.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1354.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1353.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1344.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1315.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1274.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1258.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1255.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1246.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1239.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1224.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1204.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1203.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1188.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1164.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1147.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1147.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1138.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1136.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1125.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1122.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1121.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1109.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1108.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1106.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1102.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1099.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1096.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1092.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1083.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1076.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1075.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1075.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1065.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1065.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1065.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1064.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1062.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1062.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 1060.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1060.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1051.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1042.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1024.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1022.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1022.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1020.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1019.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1012.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1007.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1003.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 998.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 997.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 994.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 991.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 990.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 986.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 986.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 984.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 984.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 983.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 979.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 966.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 965.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 964.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 961.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 959.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 957.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 950.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 948.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 947.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 942.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 941.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 940.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 938.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 938.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 935.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 932.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 928.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 925.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 925.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 923.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 919.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 914.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 908.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 905.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 901.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 898.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 894.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 887.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 884.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 883.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 882.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 882.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 879.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 872.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 868.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 867.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 863.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 859.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 857.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 855.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 855.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 853.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 852.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 849.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 847.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 845.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 842.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 841.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 838.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 837.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 834.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 830.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 827.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 826.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 824.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 823.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 823.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 818.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 818.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 815.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 814.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 812.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 811.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 807.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 802.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 800.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 797.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 796.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 791.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 789.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 788.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 787.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 787.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 786.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 781.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 781.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 780.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 777.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 776.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 773.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 769.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 767.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 766.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 765.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 763.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 763.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 760.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 753.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 752.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 750.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 748.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 747.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 746.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 745.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 743.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 742.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 740.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 739.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 736.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 735.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 733.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 732.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 732.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 730.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 728.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 726.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 726.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 723.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 719.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 717.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 714.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 713.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 709.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 706.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 702.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 701.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 700.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 697.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 694.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 688.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 684.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 680.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 679.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 674.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 665.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 663.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 662.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 661.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 658.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 657.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 655.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 655.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 648.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 646.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 639.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 637.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 636.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 635.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 622.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 622.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 621.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 621.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 620.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 618.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 610.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 602.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 594.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 589.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 587.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 586.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 584.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 583.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 580.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 579.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 578.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 576.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 568.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 564.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 560.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 552.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 548.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 538.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 535.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 506.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 492.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 486.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 472.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 458.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 399.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

351.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 351.4
FF:10164-103B2 76 years, female 351.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

509.7
Pig sample Sample description nTPM
Caudate
nTPM: 509.7
Samples: 4

Max nTPM: 598.5
Min nTPM: 399.9
Sample A Female 506.9
Sample B Female 533.5
Sample C Male 598.5
Sample D Male 399.9

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