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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1410.8 nTPM
HPA Brain:683.5 nTPM
GTEx:1410.8 nTPM
FANTOM5:516.8 Scaled Tags Per Million
Pig:1222.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

683.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 531.4
1981 Female, age 72, midline 667.6
2565 Male, age 75, midline 625.2
2048 Male, age 55, midline 481.0
2194 Female, age 79, both hemispheres 454.1
2816 Male, age 47, midline 429.0
Cervical spinal cord, dorsal horn
nTPM: 522.0
2173 Female, age 72, unknown 768.9
2069 Male, age 47, both hemispheres 615.7
2296 Male, age 66, both hemispheres 610.2
1877 Male, age 55, unknown 505.3
2721 Male, age 90, both hemispheres 316.4
2297 Male, age 75, both hemispheres 315.7
Cervical spinal cord, ventral horn
nTPM: 683.5
2480 Male, age 75, both hemispheres 935.9
2809 Male, age 90, both hemispheres 895.0
2098 Female, age 72, unknown 835.2
2068 Male, age 55, unknown 566.1
2295 Male, age 66, both hemispheres 550.9
2820 Female, age 79, both hemispheres 317.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1410.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1410.8
Samples: 159

Max nTPM: 3051.9
Min nTPM: 497.4
Std nTPM: 479.5
Median nTPM: 1371.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 3051.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2815.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2532.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2434.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2430.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2423.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2374.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2363.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2316.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2262.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2200.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2124.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2108.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2106.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2074.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2063.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2049.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2038.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1989.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1979.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1968.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1951.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1906.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1895.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1894.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1889.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1847.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1839.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1820.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1818.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1806.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1805.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1783.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1764.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1760.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1746.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1729.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1728.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1727.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1719.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1713.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1712.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1696.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1679.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1673.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1664.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1656.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1644.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1634.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1619.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1610.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1607.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1606.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1603.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1580.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1566.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1558.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1544.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1536.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1535.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1521.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1507.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1497.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1492.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1472.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1451.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1446.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1437.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1436.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1419.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1414.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1412.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1403.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1402.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1386.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1378.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1377.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1374.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1372.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1371.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1365.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1360.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1343.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1331.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1325.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1314.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1306.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1304.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1302.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1294.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1293.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1291.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1271.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1271.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1266.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1263.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1254.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1246.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1244.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1202.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1192.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1186.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1180.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1170.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1166.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1166.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1151.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1150.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1146.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1131.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1128.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1107.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1105.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1084.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1075.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1068.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1055.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1030.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1024.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1003.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1001.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 991.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 990.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 987.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 975.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 970.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 967.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 967.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 963.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 945.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 942.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 941.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 939.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 929.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 919.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 916.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 912.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 898.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 873.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 872.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 865.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 865.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 860.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 856.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 842.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 836.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 802.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 788.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 781.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 772.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 767.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 720.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 693.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 686.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 666.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 638.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 564.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 561.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 497.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

516.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 516.8
FF:10181-103D1 60 years, female 603.4
FF:10159-103A6 76 years, female 430.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1222.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1222.5
Samples: 4

Max nTPM: 1743.7
Min nTPM: 775.6
Sample A Female 775.6
Sample B Female 1414.8
Sample C Male 1743.7
Sample D Male 955.8
Ventral spinal cord
nTPM: 1159.6
Samples: 4

Max nTPM: 1384.9
Min nTPM: 967.9
Sample A Female 967.9
Sample B Female 1384.9
Sample C Male 1209.0
Sample D Male 1076.4

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