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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:114.3 nTPM
FANTOM5:321.8 Scaled Tags Per Million
Pig:151.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA018846Antibody HPA052221
Glial cells LowNot detected
Neuronal cells LowMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 114.3
Samples: 246

Max nTPM: 211.1
Min nTPM: 80.7
Std nTPM: 19.8
Median nTPM: 111.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 211.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 194.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 184.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 168.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 165.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 161.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 161.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 158.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 157.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 156.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 155.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 154.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 151.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 150.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 150.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 150.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 148.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 147.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 145.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 144.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 144.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 143.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 143.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 142.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 142.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 141.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 140.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 139.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 136.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 136.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 136.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 135.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 135.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 133.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 132.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 132.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 131.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 131.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 131.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 131.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 131.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 130.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 130.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 129.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 129.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 129.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 129.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 128.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 128.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 127.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 127.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 126.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 126.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 126.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 125.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 125.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 125.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 124.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 124.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 124.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 124.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 123.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 123.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 122.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 122.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 122.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 121.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 121.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 121.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 120.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 120.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 119.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 119.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 119.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 119.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 119.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 119.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 118.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 118.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 118.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 117.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 117.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 117.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 117.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 117.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 117.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 116.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 116.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 116.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 116.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 116.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 116.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 116.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 116.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 115.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 115.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 115.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 115.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 115.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 115.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 114.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 114.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 114.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 114.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 114.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 113.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 113.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 113.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 113.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 113.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 112.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 112.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 112.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 112.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 112.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 112.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 112.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 112.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 112.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 111.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 111.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 111.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 111.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 111.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 111.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 111.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 111.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 111.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 111.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 110.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 110.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 110.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 110.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 110.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 109.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 109.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 109.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 109.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 108.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 108.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 108.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 108.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 107.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 107.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 107.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 107.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 106.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 106.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 106.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 106.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 106.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 106.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 106.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 106.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 105.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 105.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 105.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 105.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 105.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 105.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 104.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 104.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 104.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 104.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 103.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 103.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 103.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 102.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 102.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 102.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 102.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 101.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 101.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 101.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 101.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 101.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 100.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 100.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 100.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 100.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 100.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 100.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 100.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 100.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 100.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 100.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 99.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 99.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 99.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 99.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 99.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 98.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 98.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 98.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 97.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 97.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 97.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 97.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 97.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 97.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 97.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 97.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 97.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 96.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 96.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 96.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 96.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 95.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 95.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 95.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 95.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 95.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 95.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 95.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 94.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 94.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 94.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 94.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 94.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 94.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 94.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 93.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 93.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 93.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 93.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 92.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 92.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 92.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 92.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 91.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 91.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 91.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 91.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 91.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 90.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 89.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 89.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 88.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 88.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 87.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 85.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 84.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 83.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 83.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 83.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 80.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

321.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 321.8
FF:10164-103B2 76 years, female 321.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.9
Pig sample Sample description nTPM
Caudate
nTPM: 151.9
Samples: 4

Max nTPM: 158.7
Min nTPM: 144.1
Sample A Female 158.7
Sample B Female 144.1
Sample C Male 157.3
Sample D Male 147.3

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