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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:178.4 nTPM
HPA:178.4 nTPM
GTEx:134.4 nTPM
FANTOM5:642.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA018846Antibody HPA052221
Glandular cells MediumMedium




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

178.4
overview
Male, age 65
Small intestine sample 232
nTPM: 200.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 176.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 162.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 173.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 134.4
Samples: 187

Max nTPM: 459.8
Min nTPM: 71.8
Std nTPM: 54.2
Median nTPM: 118.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 459.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 326.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 301.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 299.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 276.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 274.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 271.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 265.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 256.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 254.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 251.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 246.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 245.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 244.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 237.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 232.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 227.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 213.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 206.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 205.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 200.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 197.9
GTEX-1192X-2526-SM-59868 50-59 years, male 196.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 189.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 183.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 180.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 178.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 174.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 174.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 166.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 161.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 159.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 156.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 156.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 156.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 153.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 152.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 151.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 151.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 150.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 149.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 149.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 147.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 145.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 144.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 144.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 144.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 143.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 141.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 140.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 140.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 139.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 138.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 137.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 137.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 136.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 135.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 134.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 134.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 134.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 133.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 133.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 133.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 132.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 132.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 132.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 129.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 129.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 129.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 128.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 127.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 126.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 126.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 125.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 125.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 124.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 124.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 124.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 123.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 123.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 122.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 122.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 121.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 120.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 120.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 120.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 120.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 120.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 119.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 119.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 119.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 118.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 118.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 118.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 118.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 118.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 117.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 117.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 117.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 116.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 116.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 116.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 116.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 114.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 114.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 113.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 113.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 112.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 112.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 111.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 111.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 110.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 110.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 110.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 110.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 110.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 110.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 109.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 109.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 109.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 109.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 109.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 108.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 108.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 108.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 107.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 107.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 107.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 107.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 106.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 105.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 105.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 104.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 103.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 103.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 103.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 102.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 102.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 102.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 102.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 101.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 101.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 101.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 101.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 100.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 100.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 100.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 100.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 100.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 99.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 99.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 98.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 98.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 98.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 98.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 98.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 98.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 97.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 96.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 96.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 95.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 95.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 94.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 93.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 93.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 93.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 93.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 92.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 91.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 91.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 90.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 90.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 88.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 87.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 86.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 86.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 85.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 85.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 82.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 81.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 79.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 77.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 77.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 77.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 77.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 72.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 71.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

642.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 642.1
FF:10024-101D6 15,40,85 years, mixed 642.1

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