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UQCRC1
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:122.0 nTPM
HPA:122.0 nTPM
GTEx:58.7 nTPM
FANTOM5:325.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002815Antibody HPA003525Antibody CAB033782
Glandular cells HighHighHigh






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

122.0
overview
Male, age 65
Small intestine sample 232
nTPM: 135.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 134.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 102.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 114.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 58.7
Samples: 187

Max nTPM: 165.2
Min nTPM: 9.7
Std nTPM: 30.6
Median nTPM: 51.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 165.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 148.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 142.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 141.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 130.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 127.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 122.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 121.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 118.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 115.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 115.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 113.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 113.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 109.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 109.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 106.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 104.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 101.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 100.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 100.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 99.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 98.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 96.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 95.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 95.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 95.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 94.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 94.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 92.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 91.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 91.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 91.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 91.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 90.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 90.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 89.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 87.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 86.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 86.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 84.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 82.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 80.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 79.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 79.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 78.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 78.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 78.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 75.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 75.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 73.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 73.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 72.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 72.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 72.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 71.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 71.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 70.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 69.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 68.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 67.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 67.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 67.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 66.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 66.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 65.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 65.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 64.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 64.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 64.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 63.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 63.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 62.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 62.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 62.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 62.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 59.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 58.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 58.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 58.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 57.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 57.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 56.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 56.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 55.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 55.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 55.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 55.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 54.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 54.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 53.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 52.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 52.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 52.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 51.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 50.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 49.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 49.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 49.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 49.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 48.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 48.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 48.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 48.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 48.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 47.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 47.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 47.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 47.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 46.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 46.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 46.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 46.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 45.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 44.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 44.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 43.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 43.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 43.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 42.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 42.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 42.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 42.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 42.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 41.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 41.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 41.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 40.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 39.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 39.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 38.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 38.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 37.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 37.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 36.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 36.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 36.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 36.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 36.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 36.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 36.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 35.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 35.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 35.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 34.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 33.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 33.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 32.4
GTEX-1192X-2526-SM-59868 50-59 years, male 32.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 31.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 31.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 31.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 31.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 30.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 30.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 30.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 30.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 29.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 28.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 27.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 27.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 27.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 27.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 26.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 26.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 25.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 25.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 24.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 24.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 24.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 24.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 23.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 23.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 23.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 23.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 22.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 21.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 20.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 20.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 20.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 19.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 18.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 18.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 17.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 17.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 15.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 12.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 9.7
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

325.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 325.8
FF:10024-101D6 15,40,85 years, mixed 325.8

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