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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:213.2 nTPM
FANTOM5:394.0 Scaled Tags Per Million
Pig:3.6 nTPM
Mouse:14.3 nTPM
Allen mouse:0.2 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

213.2
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 142.9
2032 Female, age 42, unknown 175.3
2497 Male, age 66, unknown 153.7
2396 Male, age 61, right hemisphere 99.6
Centromedial thalamic nucleus
nTPM: 205.6
2279 Female, age 85, left hemisphere 271.2
2401 Male, age 76, right hemisphere 139.9
Habenula
nTPM: 97.8
2252 Male, age 62, unknown 117.0
2203 Male, age 61, left hemisphere 104.8
2276 Male, age 66, unknown 96.1
1957 Male, age 80, both hemispheres 73.3
Lateral geniculate body
nTPM: 181.6
2575 Female, age 94, right hemisphere 293.5
2841 Male, age 80, both hemispheres 259.5
2659 Male, age 66, unknown 177.9
2035 Female, age 72, unknown 172.6
2106 Female, age 67, right hemisphere 154.9
2399 Male, age 61, left hemisphere 144.4
2857 Male, age 74, right hemisphere 127.3
1953 Male, age 62, unknown 122.7
Lateral thalamic nuclei
nTPM: 185.9
2573 Female, age 94, left hemisphere 283.2
2765 Female, age 67, both hemispheres 233.1
2577 Male, age 74, both hemispheres 171.2
2661 Female, age 72, unknown 154.0
1903 Male, age 76, left hemisphere 87.8
Medial dorsal thalamic nucleus
nTPM: 113.9
2660 Female, age 72, unknown 190.1
2576 Male, age 74, both hemispheres 144.2
2572 Female, age 94, right hemisphere 131.2
1859 Male, age 76, both hemispheres 127.3
2402 Female, age 67, both hemispheres 115.0
2492 Male, age 75, right hemisphere 113.9
2026 Male, age 62, unknown 112.1
1930 Female, age 42, unknown 111.7
1810 Male, age 48, unknown 104.9
2283 Male, age 80, right hemisphere 101.4
2498 Male, age 66, unknown 84.6
2039 Female, age 72, unknown 82.3
1971 Male, age 61, right hemisphere 62.1
Medial geniculate body
nTPM: 132.4
2650 Female, age 94, left hemisphere 165.9
2571 Male, age 75, right hemisphere 148.2
2217 Female, age 72, unknown 145.3
2207 Male, age 80, right hemisphere 137.2
2657 Male, age 74, right hemisphere 132.9
2049 Male, age 76, both hemispheres 122.3
1811 Female, age 42, unknown 74.9
Nucleus reuniens
nTPM: 200.7
2210 Female, age 85, left hemisphere 347.5
2205 Male, age 80, left hemisphere 153.9
2212 Female, age 67, left hemisphere 100.8
Nucleus rhomboideus
nTPM: 179.9
2280 Female, age 85, left hemisphere 352.5
2213 Female, age 67, left hemisphere 95.1
2206 Male, age 80, both hemispheres 92.2
Posterior thalamic nucleus
nTPM: 109.1
2266 Male, age 76, right hemisphere 139.5
2655 Male, age 74, right hemisphere 110.4
2495 Female, age 67, right hemisphere 101.7
2649 Female, age 94, both hemispheres 84.7
Pulvinar
nTPM: 133.6
1932 Male, age 80, right hemisphere 168.4
2398 Male, age 61, left hemisphere 154.9
2724 Male, age 74, right hemisphere 138.8
2582 Female, age 72, unknown 138.2
1899 Female, age 42, unknown 137.3
2214 Male, age 76, right hemisphere 127.9
2496 Female, age 67, right hemisphere 122.9
1972 Male, age 62, unknown 118.5
2499 Male, age 66, unknown 117.2
1929 Male, age 48, unknown 111.7
Subthalamic nucleus
nTPM: 213.2
2056 Female, age 72, unknown 317.0
2216 Male, age 48, unknown 269.5
2275 Male, age 66, unknown 242.5
2282 Male, age 61, both hemispheres 233.4
2124 Male, age 62, unknown 207.2
2779 Female, age 42, unknown 197.2
2658 Male, age 74, both hemispheres 177.4
2406 Female, age 72, unknown 61.7
Ventral posterolateral thalamic nucleus
nTPM: 158.5
2570 Male, age 75, right hemisphere 216.9
2581 Female, age 72, unknown 181.3
2740 Male, age 76, right hemisphere 176.4
2578 Male, age 74, both hemispheres 151.2
2397 Male, age 61, right hemisphere 123.9
2197 Male, age 80, both hemispheres 101.1
Ventral posteromedial thalamic nucleus
nTPM: 131.6
2281 Male, age 75, right hemisphere 193.8
2653 Male, age 74, both hemispheres 150.7
2127 Male, age 76, right hemisphere 129.7
2758 Male, age 80, both hemispheres 96.6
2202 Male, age 61, left hemisphere 87.3
Ventral thalamic nuclei
nTPM: 167.5
2291 Female, age 72, unknown 208.0
2858 Female, age 72, unknown 201.8
2652 Male, age 74, left hemisphere 196.9
2204 Male, age 80, both hemispheres 163.1
1860 Male, age 76, both hemispheres 161.1
2580 Male, age 66, unknown 152.9
1845 Male, age 48, unknown 149.7
2285 Male, age 62, unknown 143.5
1912 Female, age 42, unknown 130.6
Zona incerta
nTPM: 183.4
2215 Male, age 66, unknown 261.3
2822 Male, age 74, right hemisphere 239.2
2663 Female, age 72, unknown 166.9
2403 Male, age 62, unknown 136.0
2208 Male, age 80, right hemisphere 113.4

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

394.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 394.0
FF:10154-103A1 76 years, female 394.0

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3.6
Pig sample Sample description nTPM
Thalamus
nTPM: 3.7
Samples: 4

Max nTPM: 4.8
Min nTPM: 2.5
Sample A Female 2.9
Sample B Female 2.5
Sample C Male 4.8
Sample D Male 4.4

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.3
Mouse sample Sample description nTPM
Thalamus
nTPM: 14.3
Samples: 4

Max nTPM: 17.0
Min nTPM: 11.3
Sample A Male 16.1
Sample B Male 11.3
Sample C Female 17.0
Sample D Female 12.9

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.2
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.2
80514103 Antisense, RP_080505_03_H04, Mouse strain C57BL/6J (56 days, male) 0.2

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