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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:92.5 nTPM
HPA:28.8 nTPM
GTEx:92.5 nTPM
FANTOM5:91.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA005434
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.8
overview
Male, age 65
Small intestine sample 232
nTPM: 20.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 27.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 44.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 23.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 92.5
Samples: 187

Max nTPM: 283.3
Min nTPM: 25.8
Std nTPM: 36.2
Median nTPM: 89.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 283.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 213.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 199.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 194.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 188.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 188.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 177.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 174.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 169.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 166.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 155.9
GTEX-1192X-2526-SM-59868 50-59 years, male 148.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 146.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 141.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 140.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 136.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 136.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 135.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 130.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 127.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 127.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 126.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 125.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 125.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 123.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 123.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 122.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 120.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 119.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 119.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 119.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 118.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 118.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 115.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 113.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 113.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 112.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 112.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 112.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 111.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 111.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 111.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 110.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 110.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 110.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 110.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 109.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 109.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 109.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 109.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 109.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 107.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 107.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 107.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 106.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 105.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 104.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 103.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 102.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 102.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 102.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 102.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 101.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 101.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 101.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 98.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 98.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 98.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 97.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 96.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 96.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 95.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 95.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 95.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 95.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 94.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 94.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 94.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 93.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 93.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 92.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 92.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 91.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 91.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 91.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 91.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 90.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 89.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 89.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 89.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 89.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 89.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 89.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 89.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 89.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 88.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 88.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 88.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 86.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 86.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 86.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 85.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 84.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 84.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 84.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 84.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 84.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 83.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 83.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 82.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 82.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 81.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 81.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 80.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 80.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 80.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 79.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 79.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 79.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 79.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 78.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 77.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 76.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 76.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 75.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 75.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 75.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 75.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 74.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 73.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 73.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 73.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 73.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 72.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 72.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 71.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 70.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 70.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 70.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 69.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 69.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 68.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 67.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 67.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 66.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 66.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 65.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 65.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 65.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 64.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 64.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 63.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 63.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 62.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 61.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 59.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 59.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 58.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 57.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 57.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 57.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 57.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 57.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 56.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 56.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 56.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 54.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 53.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 52.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 52.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 51.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 51.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 51.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 50.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 49.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 48.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 46.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 43.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 41.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 40.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 38.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 35.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 34.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 33.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 31.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 28.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 25.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

91.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 91.9
FF:10024-101D6 15,40,85 years, mixed 91.9

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