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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:317.4 nTPM
HPA Brain:825.2 nTPM
GTEx:317.4 nTPM
FANTOM5:1009.5 Scaled Tags Per Million
Pig:129.1 nTPM
Mouse:323.0 nTPM
Allen mouse:16.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

825.2
Sample id Sample description nTPM
Amygdala
nTPM: 487.2
2517 Female, age 94, left hemisphere 615.4
2514 Male, age 75, right hemisphere 550.8
1987 Female, age 91, left hemisphere 532.7
2814 Male, age 76, right hemisphere 386.5
2695 Female, age 67, right hemisphere 350.3
Basal amygdala
nTPM: 825.2
2243 Female, age 91, right hemisphere 1065.8
2827 Female, age 67, right hemisphere 963.1
2110 Male, age 80, left hemisphere 845.8
2685 Female, age 94, left hemisphere 831.3
2609 Male, age 75, right hemisphere 740.1
1955 Male, age 76, both hemispheres 505.2
Central amygdala
nTPM: 635.6
2826 Female, age 94, left hemisphere 922.9
2239 Male, age 80, left hemisphere 867.6
2515 Male, age 75, right hemisphere 583.9
2701 Female, age 91, right hemisphere 465.9
1905 Male, age 76, both hemispheres 337.6
Corticomedial amygdala
nTPM: 810.0
2829 Male, age 80, left hemisphere 1014.2
2535 Female, age 67, right hemisphere 965.8
2242 Female, age 91, right hemisphere 874.5
2429 Female, age 94, left hemisphere 735.7
2428 Male, age 75, right hemisphere 721.7
2240 Male, age 76, both hemispheres 547.9
Lateral amygdala
nTPM: 693.2
2534 Female, age 94, left hemisphere 971.7
2256 Male, age 80, left hemisphere 813.1
2830 Female, age 67, right hemisphere 762.7
2255 Female, age 91, right hemisphere 656.6
2516 Male, age 75, right hemisphere 523.6
1883 Male, age 76, both hemispheres 431.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

317.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 317.4
Samples: 152

Max nTPM: 997.7
Min nTPM: 20.2
Std nTPM: 168.0
Median nTPM: 275.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 997.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 912.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 745.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 712.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 646.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 635.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 607.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 607.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 603.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 603.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 599.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 556.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 544.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 540.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 539.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 539.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 531.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 531.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 527.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 515.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 511.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 510.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 509.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 505.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 499.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 495.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 494.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 492.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 489.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 483.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 483.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 479.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 457.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 457.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 456.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 443.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 442.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 431.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 415.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 405.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 401.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 397.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 396.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 395.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 395.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 392.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 382.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 372.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 361.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 356.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 355.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 354.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 345.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 344.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 343.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 338.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 333.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 333.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 332.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 326.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 321.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 318.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 317.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 305.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 302.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 300.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 300.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 294.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 294.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 294.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 292.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 287.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 286.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 281.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 280.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 276.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 274.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 272.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 270.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 269.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 266.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 264.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 259.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 259.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 257.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 256.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 252.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 249.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 248.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 246.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 242.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 241.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 236.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 235.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 233.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 233.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 228.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 226.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 226.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 225.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 220.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 216.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 213.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 211.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 211.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 208.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 207.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 207.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 205.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 204.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 204.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 197.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 194.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 192.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 189.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 186.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 186.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 185.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 184.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 184.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 183.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 174.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 172.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 171.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 165.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 164.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 163.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 159.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 158.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 154.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 154.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 153.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 151.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 151.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 149.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 148.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 148.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 133.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 131.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 131.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 129.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 126.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 123.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 117.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 116.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 111.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 108.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 106.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 68.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 67.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 67.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 20.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1009.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1009.5
FF:10151-102I7 76 years, female 1009.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.1
Pig sample Sample description nTPM
Amygdala
nTPM: 129.1
Samples: 4

Max nTPM: 168.3
Min nTPM: 87.3
Sample A Female 168.3
Sample B Female 87.3
Sample C Male 125.6
Sample D Male 135.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

323.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 323.0
Samples: 4

Max nTPM: 328.4
Min nTPM: 314.5
Sample A Male 314.5
Sample B Male 328.4
Sample C Female 324.1
Sample D Female 324.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.1
73994671 Antisense, RP_051214_03_E06, Mouse strain C57BL/6J (56 days, male) 18.6
69735222 Antisense, RP_050503_02_C12, Mouse strain C57BL/6J (56 days, male) 13.5

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