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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:102.5 nTPM
HPA:102.5 nTPM
GTEx:78.4 nTPM
FANTOM5:225.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA063471
Endocrine cells Not detected
Enterocytes Not detected
Enterocytes - Microvilli Not detected
Goblet cells Not detected
Paneth cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.5
overview
Male, age 65
Small intestine sample 232
nTPM: 110.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 122.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 70.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 106.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 78.4
Samples: 187

Max nTPM: 449.2
Min nTPM: 1.0
Std nTPM: 84.5
Median nTPM: 46.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 449.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 290.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 288.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 269.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 265.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 263.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 262.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 253.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 249.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 248.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 247.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 245.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 242.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 238.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 238.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 224.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 223.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 211.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 208.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 207.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 206.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 204.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 201.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 193.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 191.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 184.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 184.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 180.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 174.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 168.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 166.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 164.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 161.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 156.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 154.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 153.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 152.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 147.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 145.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 143.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 140.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 136.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 131.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 131.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 130.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 129.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 129.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 128.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 124.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 122.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 121.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 118.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 116.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 116.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 115.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 113.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 111.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 110.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 106.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 105.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 105.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 104.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 100.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 99.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 90.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 88.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 88.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 87.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 86.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 85.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 85.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 83.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 78.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 78.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 77.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 76.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 75.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 74.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 71.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 69.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 68.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 66.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 63.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 62.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 60.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 60.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 57.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 57.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 55.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 54.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 52.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 51.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 49.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 46.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 46.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 43.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 40.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 39.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 38.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 35.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 35.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 34.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 34.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 34.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 33.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 32.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 30.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 25.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 25.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 22.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 22.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 21.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 20.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 20.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 19.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 17.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 17.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 17.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 16.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 15.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 15.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 14.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 14.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 14.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 14.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 13.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 12.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 11.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 11.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 11.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 11.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 10.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 9.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 9.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 9.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 8.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 8.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 7.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 7.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 7.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 7.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 7.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 7.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 7.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 7.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 6.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 5.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 5.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 5.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 5.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 5.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 4.9
GTEX-1192X-2526-SM-59868 50-59 years, male 4.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 4.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 4.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 4.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 4.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 3.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 3.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 3.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 3.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 3.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 3.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 3.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 3.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 3.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 3.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 3.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 3.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 2.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 2.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 2.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 2.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

225.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 225.5
FF:10024-101D6 15,40,85 years, mixed 225.5

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