MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:83.9 nTPM
HPA Brain:206.2 nTPM
GTEx:83.9 nTPM
FANTOM5:192.6 Scaled Tags Per Million
Pig:74.7 nTPM
Mouse:96.2 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 206.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 165.4
2586 Male, age 75, left hemisphere 195.2
2828 Female, age 72, unknown 185.4
1833 Male, age 53, unknown 181.3
1870 Female, age 42, unknown 175.9
1830 Male, age 51, unknown 164.6
2411 Female, age 72, unknown 163.9
1827 Male, age 72, unknown 154.5
2666 Male, age 74, left hemisphere 148.9
2219 Male, age 76, both hemispheres 146.3
2019 Male, age 18, unknown 138.5
Dorsal raphe nucleus
nTPM: 187.2
2047 Male, age 72, unknown 233.2
2750 Male, age 76, both hemispheres 179.3
2016 Female, age 72, unknown 178.8
2298 Female, age 72, unknown 176.6
1828 Male, age 53, unknown 167.9
Inferior colliculus
nTPM: 164.0
1848 Female, age 42, unknown 172.6
2849 Male, age 72, unknown 170.4
1890 Male, age 53, unknown 165.8
2097 Female, age 72, unknown 147.2
Median raphe nucleus
nTPM: 206.2
2220 Male, age 76, midline 206.2
Periaquaductal grey, anterior
nTPM: 157.8
1947 Male, age 18, unknown 192.8
1795 Male, age 51, unknown 166.4
2502 Female, age 75, unknown 114.2
Periaquaductal grey, dorsal
nTPM: 168.8
2850 Male, age 76, both hemispheres 208.7
1840 Male, age 53, unknown 171.9
1831 Male, age 72, unknown 149.0
2464 Female, age 72, unknown 145.5
Periaquaductal grey, lateral
nTPM: 176.4
2140 Male, age 76, both hemispheres 191.4
2272 Male, age 74, both hemispheres 177.9
2053 Male, age 18, unknown 160.0
Pretectal area
nTPM: 168.8
2667 Female, age 75, unknown 193.0
2316 Male, age 76, right hemisphere 191.6
2224 Female, age 72, unknown 170.7
2825 Male, age 18, unknown 168.9
1817 Female, age 42, unknown 167.7
2273 Male, age 74, both hemispheres 167.6
1816 Male, age 51, unknown 166.1
1944 Female, age 72, unknown 164.5
1815 Male, age 53, unknown 162.3
2407 Male, age 75, both hemispheres 153.6
2007 Male, age 72, unknown 150.3
Red nucleus
nTPM: 153.6
1954 Female, age 42, unknown 164.8
2725 Female, age 75, unknown 164.6
2227 Male, age 72, unknown 163.0
2769 Male, age 72, unknown 159.4
2503 Female, age 72, unknown 158.9
1904 Male, age 53, unknown 157.8
2584 Male, age 75, left hemisphere 150.9
1821 Female, age 72, unknown 150.7
2588 Male, age 74, left hemisphere 147.7
1865 Male, age 51, unknown 145.9
2785 Male, age 18, unknown 145.1
2823 Male, age 76, right hemisphere 133.9
Substantia nigra
nTPM: 182.3
1916 Female, age 42, unknown 216.3
2699 Male, age 18, unknown 205.2
2590 Female, age 75, unknown 188.0
2583 Male, age 75, right hemisphere 187.1
2665 Male, age 74, both hemispheres 180.1
1889 Female, age 72, unknown 179.5
1851 Male, age 51, unknown 176.1
2409 Female, age 72, unknown 168.2
1941 Male, age 53, unknown 166.7
2241 Male, age 72, unknown 155.7
Superior colliculus
nTPM: 159.2
1913 Female, age 42, unknown 180.0
1995 Male, age 72, unknown 171.3
1796 Male, age 53, unknown 168.3
2668 Female, age 75, unknown 167.9
2087 Female, age 72, unknown 157.5
1839 Male, age 51, unknown 155.4
2261 Male, age 18, unknown 154.4
2587 Male, age 74, left hemisphere 147.4
2664 Male, age 75, both hemispheres 145.5
1895 Male, age 76, right hemisphere 144.2
Ventral tegmental area
nTPM: 181.7
1942 Male, age 51, unknown 188.5
1915 Female, age 42, unknown 185.4
2223 Female, age 72, unknown 185.4
2218 Male, age 76, both hemispheres 182.5
2021 Male, age 53, unknown 181.0
2410 Female, age 72, unknown 167.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 83.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.9
Samples: 139

Max nTPM: 176.0
Min nTPM: 54.6
Std nTPM: 21.7
Median nTPM: 78.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 176.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 164.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 152.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 148.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 145.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 128.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 125.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 125.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 124.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 120.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 120.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 192.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 192.6
FF:10158-103A5 76 years, female 192.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 74.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.3
Samples: 4

Max nTPM: 79.1
Min nTPM: 60.3
Sample A Female 76.3
Sample B Female 60.3
Sample C Male 69.6
Sample D Male 79.1
Midbrain
nTPM: 74.7
Samples: 4

Max nTPM: 88.2
Min nTPM: 65.5
Sample A Female 88.2
Sample B Female 70.0
Sample C Male 75.2
Sample D Male 65.5
Periaqueductal gray
nTPM: 62.8
Samples: 3

Max nTPM: 68.4
Min nTPM: 56.6
Sample B Female 68.4
Sample C Male 63.5
Sample D Male 56.6
Superior colliculi
nTPM: 71.5
Samples: 4

Max nTPM: 81.2
Min nTPM: 52.1
Sample A Female 77.5
Sample B Female 52.1
Sample C Male 81.2
Sample D Male 75.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 96.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.2
Samples: 4

Max nTPM: 101.2
Min nTPM: 90.4
Sample A Male 95.0
Sample B Male 90.4
Sample C Female 98.1
Sample D Female 101.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
70615595 Antisense, RP_050725_01_D03, Mouse strain C57BL/6J (56 days, male) 7.0
532746 Antisense, RP_040825_02_A09, Mouse strain C57BL/6J (56 days, male) 0.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org