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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:28.0 nTPM
HPA Brain:133.8 nTPM
GTEx:28.0 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:37.0 nTPM
Mouse:81.4 nTPM
Allen mouse:5.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.8
Sample id Sample description nTPM
Amygdala
nTPM: 77.6
2814 Male, age 76, right hemisphere 149.3
2517 Female, age 94, left hemisphere 94.6
1987 Female, age 91, left hemisphere 60.2
2695 Female, age 67, right hemisphere 42.0
2514 Male, age 75, right hemisphere 41.6
Basal amygdala
nTPM: 133.8
2243 Female, age 91, right hemisphere 164.6
2685 Female, age 94, left hemisphere 158.0
2110 Male, age 80, left hemisphere 152.1
1955 Male, age 76, both hemispheres 141.4
2827 Female, age 67, right hemisphere 117.1
2609 Male, age 75, right hemisphere 69.5
Central amygdala
nTPM: 92.3
1905 Male, age 76, both hemispheres 156.0
2239 Male, age 80, left hemisphere 117.0
2826 Female, age 94, left hemisphere 105.1
2701 Female, age 91, right hemisphere 48.7
2515 Male, age 75, right hemisphere 34.8
Corticomedial amygdala
nTPM: 122.9
2535 Female, age 67, right hemisphere 163.4
2829 Male, age 80, left hemisphere 149.0
2240 Male, age 76, both hemispheres 145.2
2429 Female, age 94, left hemisphere 143.8
2242 Female, age 91, right hemisphere 81.2
2428 Male, age 75, right hemisphere 54.9
Lateral amygdala
nTPM: 89.9
1883 Male, age 76, both hemispheres 134.8
2534 Female, age 94, left hemisphere 125.6
2256 Male, age 80, left hemisphere 115.2
2255 Female, age 91, right hemisphere 82.2
2830 Female, age 67, right hemisphere 50.9
2516 Male, age 75, right hemisphere 30.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 28.0
Samples: 152

Max nTPM: 74.2
Min nTPM: 0.7
Std nTPM: 15.9
Median nTPM: 26.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 74.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 73.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 73.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 68.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 65.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 64.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 60.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 60.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 58.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 54.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 54.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 53.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 51.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 50.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 50.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 49.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 46.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 46.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 45.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 45.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 45.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 45.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 43.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 42.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 42.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 41.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 41.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 41.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 40.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 40.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 39.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 39.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 39.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 39.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 38.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 38.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 37.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 37.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 37.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 37.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 36.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 36.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 36.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 36.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 35.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 35.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 35.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 34.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 34.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 33.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 33.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 32.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 32.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 32.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 32.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 32.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 31.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 31.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 31.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 31.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 31.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 31.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 30.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 30.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 29.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 29.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 29.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 29.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 29.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 28.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 27.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 27.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 27.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 27.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 27.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 26.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 26.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 25.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 25.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 25.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 25.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 25.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 25.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 24.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 24.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 24.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 23.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 22.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 22.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 22.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 22.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 22.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 22.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 21.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 20.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 20.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 20.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 20.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 20.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 20.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 19.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 18.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 18.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 18.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 18.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 17.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 17.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 17.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 17.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 16.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 16.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 16.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 15.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 14.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 14.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 14.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 14.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 14.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 13.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 13.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 13.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 13.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 13.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 13.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 12.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 12.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 12.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 11.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 11.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 11.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 11.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 10.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 9.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 9.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 9.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 9.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 9.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 9.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 8.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 8.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 8.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 8.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 6.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 6.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 6.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 6.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 5.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 4.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 0.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 0.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 68.5
FF:10151-102I7 76 years, female 68.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.0
Pig sample Sample description nTPM
Amygdala
nTPM: 37.0
Samples: 4

Max nTPM: 53.4
Min nTPM: 25.6
Sample A Female 53.4
Sample B Female 25.6
Sample C Male 31.9
Sample D Male 37.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 81.5
Samples: 4

Max nTPM: 84.4
Min nTPM: 78.1
Sample A Male 79.0
Sample B Male 84.4
Sample C Female 84.3
Sample D Female 78.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.7
1035 Antisense, RP_Baylor_103198, Mouse strain C57BL/6J (56 days, male) 5.7
1036 Antisense, RP_Baylor_103198, Mouse strain C57BL/6J (56 days, male) 3.0

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