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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:55.8 nTPM
HPA Brain:49.1 nTPM
GTEx:55.8 nTPM
FANTOM5:0.7 Scaled Tags Per Million
Pig:3.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 42.7
2194 Female, age 79, both hemispheres 55.3
2816 Male, age 47, midline 50.4
2048 Male, age 55, midline 39.0
1981 Female, age 72, midline 37.4
2565 Male, age 75, midline 31.4
Cervical spinal cord, dorsal horn
nTPM: 46.7
2296 Male, age 66, both hemispheres 82.4
2173 Female, age 72, unknown 56.0
2069 Male, age 47, both hemispheres 42.1
1877 Male, age 55, unknown 40.2
2721 Male, age 90, both hemispheres 31.2
2297 Male, age 75, both hemispheres 28.1
Cervical spinal cord, ventral horn
nTPM: 49.1
2820 Female, age 79, both hemispheres 77.1
2068 Male, age 55, unknown 58.9
2098 Female, age 72, unknown 44.1
2480 Male, age 75, both hemispheres 41.9
2809 Male, age 90, both hemispheres 37.6
2295 Male, age 66, both hemispheres 35.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 55.8
Samples: 159

Max nTPM: 114.6
Min nTPM: 11.3
Std nTPM: 19.5
Median nTPM: 55.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 114.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 101.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 99.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 95.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 93.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 93.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 92.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 90.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 89.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 88.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 86.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 82.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 81.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 81.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 81.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 80.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 80.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 80.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 79.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 79.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 77.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 76.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 76.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 76.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 75.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 74.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 74.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 74.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 74.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 74.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 72.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 72.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 72.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 72.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 71.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 71.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 71.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 71.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 71.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 70.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 70.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 69.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 68.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 67.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 65.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 65.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 65.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 65.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 65.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 65.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 64.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 64.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 64.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 64.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 64.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 64.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 63.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 63.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 61.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 61.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 60.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 60.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 60.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 60.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 59.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 59.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 59.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 59.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 58.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 58.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 57.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 57.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 57.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 56.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 56.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 56.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 56.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 55.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 55.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 55.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 55.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 54.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 54.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 54.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 54.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 54.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 54.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 54.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 53.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 52.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 52.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 51.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 50.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 50.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 50.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 50.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 49.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 49.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 49.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 49.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 49.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 48.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 48.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 48.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 48.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 47.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 47.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 47.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 46.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 46.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 45.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 44.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 43.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 43.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 43.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 43.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 43.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 42.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 42.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 42.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 41.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 41.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 41.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 41.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 41.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 40.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 40.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 39.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 39.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 37.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 37.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 37.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 37.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 37.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 36.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 36.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 35.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 34.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 33.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 32.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 31.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 30.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 29.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 28.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 28.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 28.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 28.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 26.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 24.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 23.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 23.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 22.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 21.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 20.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 19.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 18.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 15.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 15.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 11.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

0.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 0.7
FF:10159-103A6 76 years, female 1.0
FF:10181-103D1 60 years, female 0.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 3.4
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.0
Sample A Female 2.0
Sample B Female 4.0
Sample C Male 4.0
Sample D Male 3.4
Ventral spinal cord
nTPM: 2.9
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.1
Sample A Female 2.1
Sample B Female 2.6
Sample C Male 3.0
Sample D Male 3.8

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