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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:162.9 nTPM
HPA Brain:150.9 nTPM
GTEx:162.9 nTPM
FANTOM5:84.6 Scaled Tags Per Million
Pig:36.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 133.2
1981 Female, age 72, midline 157.0
2194 Female, age 79, both hemispheres 146.1
2816 Male, age 47, midline 138.9
2048 Male, age 55, midline 127.2
2565 Male, age 75, midline 96.9
Cervical spinal cord, dorsal horn
nTPM: 123.0
2296 Male, age 66, both hemispheres 200.3
2173 Female, age 72, unknown 194.4
2069 Male, age 47, both hemispheres 119.1
1877 Male, age 55, unknown 105.0
2721 Male, age 90, both hemispheres 61.2
2297 Male, age 75, both hemispheres 58.4
Cervical spinal cord, ventral horn
nTPM: 150.9
2068 Male, age 55, unknown 179.8
2098 Female, age 72, unknown 172.6
2809 Male, age 90, both hemispheres 162.5
2820 Female, age 79, both hemispheres 141.2
2480 Male, age 75, both hemispheres 130.6
2295 Male, age 66, both hemispheres 118.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

162.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 162.9
Samples: 159

Max nTPM: 338.6
Min nTPM: 42.2
Std nTPM: 51.6
Median nTPM: 161.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 338.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 308.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 293.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 286.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 267.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 264.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 264.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 262.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 247.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 245.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 241.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 237.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 236.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 232.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 230.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 229.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 229.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 227.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 224.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 218.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 218.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 215.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 214.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 209.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 209.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 208.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 207.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 206.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 205.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 204.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 204.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 203.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 202.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 202.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 202.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 200.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 200.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 197.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 195.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 193.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 192.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 192.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 192.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 187.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 186.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 186.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 185.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 184.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 183.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 183.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 182.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 182.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 182.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 180.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 180.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 178.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 178.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 177.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 177.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 176.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 176.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 175.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 175.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 175.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 175.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 174.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 174.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 173.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 171.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 169.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 169.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 169.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 169.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 167.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 165.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 164.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 163.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 162.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 162.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 161.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 160.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 160.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 160.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 160.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 158.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 158.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 156.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 154.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 150.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 150.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 149.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 149.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 148.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 147.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 147.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 147.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 146.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 145.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 144.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 144.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 143.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 142.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 141.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 141.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 140.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 139.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 137.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 137.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 137.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 136.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 136.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 136.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 136.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 135.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 134.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 131.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 130.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 129.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 128.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 124.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 124.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 124.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 122.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 122.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 122.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 121.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 120.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 120.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 118.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 116.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 114.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 112.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 112.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 112.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 111.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 109.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 108.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 107.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 105.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 103.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 100.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 99.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 99.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 98.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 98.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 96.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 96.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 94.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 93.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 92.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 92.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 86.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 84.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 71.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 66.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 61.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 56.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 48.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 42.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

84.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 84.6
FF:10181-103D1 60 years, female 96.8
FF:10159-103A6 76 years, female 72.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 36.8
Samples: 4

Max nTPM: 74.9
Min nTPM: 3.8
Sample A Female 3.8
Sample B Female 45.6
Sample C Male 74.9
Sample D Male 23.0
Ventral spinal cord
nTPM: 10.2
Samples: 4

Max nTPM: 23.7
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 5.2
Sample C Male 23.7
Sample D Male 8.4

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