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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:297.7 nTPM
HPA Brain:110.6 nTPM
GTEx:297.7 nTPM
FANTOM5:687.1 Scaled Tags Per Million
Pig:416.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 81.0
1981 Female, age 72, midline 101.2
2816 Male, age 47, midline 85.0
2194 Female, age 79, both hemispheres 77.3
2565 Male, age 75, midline 74.2
2048 Male, age 55, midline 67.4
Cervical spinal cord, dorsal horn
nTPM: 110.6
2296 Male, age 66, both hemispheres 190.6
2173 Female, age 72, unknown 142.2
2069 Male, age 47, both hemispheres 119.7
1877 Male, age 55, unknown 89.6
2297 Male, age 75, both hemispheres 67.1
2721 Male, age 90, both hemispheres 54.2
Cervical spinal cord, ventral horn
nTPM: 98.7
2098 Female, age 72, unknown 129.9
2068 Male, age 55, unknown 128.8
2809 Male, age 90, both hemispheres 95.4
2480 Male, age 75, both hemispheres 87.7
2820 Female, age 79, both hemispheres 82.8
2295 Male, age 66, both hemispheres 67.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

297.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 297.7
Samples: 159

Max nTPM: 698.5
Min nTPM: 50.6
Std nTPM: 133.1
Median nTPM: 284.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 698.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 694.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 659.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 650.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 621.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 578.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 561.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 558.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 516.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 508.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 496.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 491.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 486.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 483.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 475.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 466.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 463.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 452.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 449.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 439.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 434.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 432.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 430.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 430.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 429.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 427.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 425.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 425.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 422.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 420.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 417.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 415.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 401.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 400.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 397.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 396.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 387.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 383.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 380.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 374.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 371.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 371.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 371.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 370.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 369.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 369.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 367.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 357.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 356.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 352.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 352.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 350.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 347.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 345.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 345.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 344.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 337.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 331.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 330.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 329.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 329.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 327.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 325.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 319.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 316.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 314.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 312.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 306.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 306.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 302.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 301.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 299.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 298.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 296.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 292.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 290.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 290.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 288.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 286.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 284.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 284.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 277.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 276.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 273.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 273.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 272.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 270.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 270.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 269.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 266.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 265.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 262.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 261.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 260.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 259.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 254.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 254.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 251.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 250.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 249.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 243.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 242.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 241.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 241.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 239.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 238.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 235.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 231.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 228.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 226.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 223.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 223.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 220.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 216.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 215.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 210.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 210.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 205.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 203.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 197.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 196.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 196.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 195.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 194.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 194.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 189.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 189.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 186.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 177.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 175.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 174.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 171.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 168.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 165.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 159.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 157.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 155.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 143.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 143.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 135.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 132.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 126.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 126.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 123.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 123.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 121.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 117.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 106.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 102.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 97.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 97.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 93.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 91.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 90.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 86.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 83.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 78.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 73.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 50.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

687.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 687.1
FF:10159-103A6 76 years, female 693.1
FF:10181-103D1 60 years, female 681.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

416.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 413.2
Samples: 4

Max nTPM: 479.3
Min nTPM: 347.7
Sample A Female 347.7
Sample B Female 414.8
Sample C Male 479.3
Sample D Male 410.8
Ventral spinal cord
nTPM: 416.0
Samples: 4

Max nTPM: 512.8
Min nTPM: 351.8
Sample A Female 351.8
Sample B Female 415.6
Sample C Male 383.6
Sample D Male 512.8

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