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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:316.3 nTPM
FANTOM5:134.7 Scaled Tags Per Million
Pig:231.4 nTPM
Mouse:1213.5 nTPM
Allen mouse:24.8 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

316.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 229.2
2032 Female, age 42, unknown 314.4
2396 Male, age 61, right hemisphere 202.9
2497 Male, age 66, unknown 170.2
Centromedial thalamic nucleus
nTPM: 221.8
2401 Male, age 76, right hemisphere 389.4
2279 Female, age 85, left hemisphere 54.2
Habenula
nTPM: 253.6
1957 Male, age 80, both hemispheres 358.1
2203 Male, age 61, left hemisphere 258.5
2276 Male, age 66, unknown 206.5
2252 Male, age 62, unknown 191.4
Lateral geniculate body
nTPM: 316.3
2106 Female, age 67, right hemisphere 695.0
1953 Male, age 62, unknown 387.6
2035 Female, age 72, unknown 366.0
2399 Male, age 61, left hemisphere 349.2
2575 Female, age 94, right hemisphere 213.3
2841 Male, age 80, both hemispheres 207.2
2857 Male, age 74, right hemisphere 168.4
2659 Male, age 66, unknown 143.7
Lateral thalamic nuclei
nTPM: 215.9
2765 Female, age 67, both hemispheres 343.5
1903 Male, age 76, left hemisphere 248.6
2573 Female, age 94, left hemisphere 221.0
2661 Female, age 72, unknown 142.0
2577 Male, age 74, both hemispheres 124.4
Medial dorsal thalamic nucleus
nTPM: 236.7
2498 Male, age 66, unknown 334.1
1859 Male, age 76, both hemispheres 333.6
1971 Male, age 61, right hemisphere 312.7
2283 Male, age 80, right hemisphere 306.4
1810 Male, age 48, unknown 250.0
2026 Male, age 62, unknown 249.8
2572 Female, age 94, right hemisphere 231.5
2402 Female, age 67, both hemispheres 231.1
1930 Female, age 42, unknown 216.2
2576 Male, age 74, both hemispheres 172.7
2492 Male, age 75, right hemisphere 162.7
2039 Female, age 72, unknown 147.7
2660 Female, age 72, unknown 128.8
Medial geniculate body
nTPM: 186.4
1811 Female, age 42, unknown 284.5
2650 Female, age 94, left hemisphere 215.2
2657 Male, age 74, right hemisphere 207.7
2207 Male, age 80, right hemisphere 187.3
2049 Male, age 76, both hemispheres 153.7
2217 Female, age 72, unknown 150.1
2571 Male, age 75, right hemisphere 106.3
Nucleus reuniens
nTPM: 167.4
2212 Female, age 67, left hemisphere 269.7
2205 Male, age 80, left hemisphere 143.1
2210 Female, age 85, left hemisphere 89.5
Nucleus rhomboideus
nTPM: 160.6
2206 Male, age 80, both hemispheres 274.6
2213 Female, age 67, left hemisphere 124.1
2280 Female, age 85, left hemisphere 83.2
Posterior thalamic nucleus
nTPM: 217.4
2266 Male, age 76, right hemisphere 307.8
2649 Female, age 94, both hemispheres 219.2
2495 Female, age 67, right hemisphere 190.5
2655 Male, age 74, right hemisphere 152.0
Pulvinar
nTPM: 275.6
1932 Male, age 80, right hemisphere 383.6
1972 Male, age 62, unknown 380.6
2398 Male, age 61, left hemisphere 315.5
2496 Female, age 67, right hemisphere 295.5
1899 Female, age 42, unknown 285.5
2214 Male, age 76, right hemisphere 268.8
1929 Male, age 48, unknown 247.7
2499 Male, age 66, unknown 217.7
2724 Male, age 74, right hemisphere 181.9
2582 Female, age 72, unknown 179.4
Subthalamic nucleus
nTPM: 182.0
2275 Male, age 66, unknown 236.4
2406 Female, age 72, unknown 223.1
2282 Male, age 61, both hemispheres 209.1
2124 Male, age 62, unknown 198.3
2658 Male, age 74, both hemispheres 195.8
2779 Female, age 42, unknown 146.0
2056 Female, age 72, unknown 144.3
2216 Male, age 48, unknown 103.0
Ventral posterolateral thalamic nucleus
nTPM: 229.9
2740 Male, age 76, right hemisphere 376.6
2397 Male, age 61, right hemisphere 301.8
2197 Male, age 80, both hemispheres 277.7
2570 Male, age 75, right hemisphere 156.7
2578 Male, age 74, both hemispheres 143.0
2581 Female, age 72, unknown 123.8
Ventral posteromedial thalamic nucleus
nTPM: 217.4
2202 Male, age 61, left hemisphere 339.5
2758 Male, age 80, both hemispheres 280.3
2281 Male, age 75, right hemisphere 184.0
2127 Male, age 76, right hemisphere 148.9
2653 Male, age 74, both hemispheres 134.1
Ventral thalamic nuclei
nTPM: 207.4
1860 Male, age 76, both hemispheres 346.9
1845 Male, age 48, unknown 326.9
2285 Male, age 62, unknown 214.0
1912 Female, age 42, unknown 200.0
2858 Female, age 72, unknown 174.8
2580 Male, age 66, unknown 172.1
2204 Male, age 80, both hemispheres 163.5
2291 Female, age 72, unknown 151.5
2652 Male, age 74, left hemisphere 117.3
Zona incerta
nTPM: 152.8
2215 Male, age 66, unknown 201.6
2822 Male, age 74, right hemisphere 190.1
2208 Male, age 80, right hemisphere 162.6
2403 Male, age 62, unknown 116.3
2663 Female, age 72, unknown 93.1

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

134.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 134.7
FF:10154-103A1 76 years, female 134.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

231.4
Pig sample Sample description nTPM
Thalamus
nTPM: 231.4
Samples: 4

Max nTPM: 298.3
Min nTPM: 155.2
Sample A Female 257.8
Sample B Female 214.3
Sample C Male 298.3
Sample D Male 155.2

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1213.5
Mouse sample Sample description nTPM
Thalamus
nTPM: 1213.6
Samples: 4

Max nTPM: 1299.6
Min nTPM: 1116.5
Sample A Male 1116.5
Sample B Male 1299.6
Sample C Female 1165.5
Sample D Female 1272.7

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

24.8
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 24.8
69752155 Antisense, RP_050505_01_C05, Mouse strain C57BL/6J (56 days, male) 24.8

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