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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:163.3 nTPM
HPA Brain:195.0 nTPM
GTEx:163.3 nTPM
FANTOM5:252.7 Scaled Tags Per Million
Pig:164.8 nTPM
Mouse:371.6 nTPM
Allen mouse:14.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

195.0
Sample id Sample description nTPM
Amygdala
nTPM: 195.0
2514 Male, age 75, right hemisphere 218.9
2814 Male, age 76, right hemisphere 198.2
2695 Female, age 67, right hemisphere 194.1
1987 Female, age 91, left hemisphere 186.7
2517 Female, age 94, left hemisphere 177.0
Basal amygdala
nTPM: 161.3
2110 Male, age 80, left hemisphere 178.0
1955 Male, age 76, both hemispheres 175.0
2685 Female, age 94, left hemisphere 172.0
2243 Female, age 91, right hemisphere 167.0
2609 Male, age 75, right hemisphere 158.9
2827 Female, age 67, right hemisphere 116.9
Central amygdala
nTPM: 172.0
1905 Male, age 76, both hemispheres 181.0
2515 Male, age 75, right hemisphere 175.7
2826 Female, age 94, left hemisphere 173.8
2239 Male, age 80, left hemisphere 171.7
2701 Female, age 91, right hemisphere 157.9
Corticomedial amygdala
nTPM: 176.9
2240 Male, age 76, both hemispheres 197.7
2829 Male, age 80, left hemisphere 192.2
2428 Male, age 75, right hemisphere 191.5
2429 Female, age 94, left hemisphere 180.7
2242 Female, age 91, right hemisphere 168.5
2535 Female, age 67, right hemisphere 130.6
Lateral amygdala
nTPM: 157.6
2516 Male, age 75, right hemisphere 190.7
1883 Male, age 76, both hemispheres 189.1
2534 Female, age 94, left hemisphere 163.6
2256 Male, age 80, left hemisphere 138.1
2255 Female, age 91, right hemisphere 136.6
2830 Female, age 67, right hemisphere 127.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 163.3
Samples: 152

Max nTPM: 256.0
Min nTPM: 73.8
Std nTPM: 35.0
Median nTPM: 162.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 256.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 253.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 242.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 239.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 233.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 230.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 228.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 221.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 218.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 218.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 217.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 215.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 214.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 212.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 212.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 210.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 209.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 206.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 203.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 203.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 203.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 202.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 197.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 197.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 197.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 195.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 195.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 194.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 192.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 192.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 191.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 190.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 190.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 189.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 189.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 188.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 188.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 187.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 185.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 184.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 183.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 181.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 181.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 179.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 179.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 178.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 178.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 178.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 177.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 177.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 177.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 176.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 175.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 175.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 175.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 174.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 174.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 174.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 173.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 173.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 173.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 172.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 171.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 171.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 171.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 171.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 169.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 169.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 168.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 167.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 166.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 165.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 164.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 163.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 163.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 162.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 162.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 162.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 161.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 161.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 161.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 160.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 159.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 159.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 159.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 158.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 158.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 157.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 155.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 155.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 153.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 151.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 151.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 150.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 150.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 149.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 149.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 149.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 148.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 147.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 147.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 147.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 147.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 146.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 146.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 146.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 146.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 145.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 145.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 145.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 142.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 141.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 140.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 139.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 139.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 138.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 137.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 135.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 134.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 132.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 132.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 130.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 130.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 129.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 129.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 128.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 127.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 127.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 125.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 123.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 123.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 123.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 122.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 121.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 120.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 119.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 118.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 116.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 116.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 115.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 115.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 114.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 114.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 110.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 109.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 107.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 106.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 105.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 103.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 90.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 75.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 73.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

252.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 252.7
FF:10151-102I7 76 years, female 252.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

164.8
Pig sample Sample description nTPM
Amygdala
nTPM: 164.9
Samples: 4

Max nTPM: 199.7
Min nTPM: 136.5
Sample A Female 199.7
Sample B Female 167.3
Sample C Male 136.5
Sample D Male 155.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

371.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 371.6
Samples: 4

Max nTPM: 390.2
Min nTPM: 344.7
Sample A Male 390.2
Sample B Male 378.3
Sample C Female 344.7
Sample D Female 373.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.2
67752309 Antisense, RP_040922_01_D07, Mouse strain C57BL/6J (56 days, male) 27.7
68196969 Antisense, RP_040922_01_D07, Mouse strain C57BL/6J (56 days, male) 21.7
314 Antisense, RP_Baylor_103388, Mouse strain C57BL/6J (56 days, male) 0.7

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