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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:157.7 nTPM
FANTOM5:305.1 Scaled Tags Per Million
Pig:196.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA036564Antibody HPA036565Antibody CAB033552
Glial cells HighMediumMedium
Neuronal cells HighHighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 157.7
Samples: 246

Max nTPM: 435.0
Min nTPM: 75.2
Std nTPM: 45.8
Median nTPM: 155.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 435.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 282.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 264.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 262.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 260.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 255.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 252.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 248.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 238.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 229.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 228.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 226.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 226.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 224.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 223.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 219.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 218.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 218.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 217.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 217.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 217.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 216.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 216.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 216.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 215.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 211.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 210.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 210.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 209.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 208.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 208.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 207.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 205.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 205.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 205.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 204.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 203.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 203.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 202.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 201.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 200.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 199.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 198.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 197.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 197.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 196.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 195.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 195.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 194.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 194.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 192.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 192.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 192.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 191.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 191.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 190.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 190.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 190.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 190.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 190.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 189.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 189.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 187.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 187.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 186.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 185.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 185.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 184.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 184.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 183.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 182.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 182.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 181.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 180.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 180.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 179.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 179.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 179.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 179.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 177.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 176.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 175.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 174.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 174.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 173.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 172.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 171.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 170.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 170.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 170.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 170.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 170.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 169.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 169.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 168.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 168.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 168.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 168.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 167.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 167.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 165.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 165.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 165.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 165.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 163.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 163.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 162.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 162.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 161.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 161.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 161.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 160.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 160.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 160.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 160.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 159.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 159.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 158.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 158.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 158.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 156.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 156.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 155.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 155.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 154.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 154.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 153.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 153.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 153.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 153.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 152.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 152.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 151.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 151.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 151.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 150.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 150.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 150.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 150.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 149.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 148.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 148.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 147.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 146.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 146.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 145.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 143.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 142.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 141.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 141.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 140.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 138.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 138.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 138.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 137.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 136.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 136.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 136.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 135.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 135.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 135.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 134.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 133.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 133.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 133.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 133.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 132.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 132.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 131.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 131.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 130.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 130.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 129.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 129.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 129.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 129.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 129.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 128.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 128.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 128.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 127.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 126.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 126.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 125.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 124.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 124.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 123.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 122.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 122.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 120.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 119.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 119.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 118.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 118.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 117.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 117.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 116.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 116.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 115.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 114.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 114.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 114.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 113.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 112.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 112.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 111.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 111.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 111.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 110.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 110.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 108.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 108.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 108.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 108.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 108.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 107.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 107.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 106.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 103.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 102.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 102.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 101.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 101.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 99.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 98.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 98.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 96.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 95.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 94.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 93.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 91.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 90.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 89.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 89.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 89.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 88.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 88.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 88.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 86.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 85.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 84.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 84.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 79.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 77.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 77.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 75.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

305.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 305.1
FF:10164-103B2 76 years, female 305.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.8
Pig sample Sample description nTPM
Caudate
nTPM: 196.8
Samples: 4

Max nTPM: 207.4
Min nTPM: 180.6
Sample A Female 207.4
Sample B Female 180.6
Sample C Male 204.1
Sample D Male 195.1

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