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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:182.3 nTPM
GTEx:160.5 nTPM
FANTOM5:325.6 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA036564Antibody HPA036565Antibody CAB033552
Glial cells HighMediumLow
Neuronal cells HighHighHigh






HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.3
Sample id Sample description nTPM
Hippocampus
nTPM: 182.3
1898 Male, age 80, left hemisphere 238.0
1911 Female, age 85, right hemisphere 193.0
2529 Female, age 94, left hemisphere 177.1
2621 Female, age 67, right hemisphere 168.0
1855 Male, age 76, left hemisphere 165.6
2148 Female, age 91, left hemisphere 151.9

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 160.5
Samples: 197

Max nTPM: 368.1
Min nTPM: 67.7
Std nTPM: 39.3
Median nTPM: 158.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 368.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 256.7
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 255.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 241.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 234.4
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 233.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 231.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 231.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 228.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 226.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 224.3
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 221.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 220.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 219.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 216.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 215.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 211.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 210.5
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 209.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 208.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 208.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 207.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 206.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 206.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 205.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 204.0
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 203.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 202.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 202.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 200.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 200.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 199.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 197.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 197.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 197.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 197.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 196.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 195.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 194.5
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 194.5
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 193.0
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 192.3
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 191.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 190.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 190.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 189.6
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 189.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 186.2
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 186.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 184.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 183.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 181.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 181.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 181.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 180.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 180.2
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 179.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 179.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 179.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 179.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 178.9
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 178.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 178.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 177.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 176.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 176.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 176.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 175.8
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 174.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 173.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 172.6
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 172.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 170.4
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 170.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 167.7
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 166.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 166.7
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 166.7
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 166.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 166.0
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 164.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 164.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 164.3
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 164.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 163.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 163.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 163.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 162.6
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 162.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 162.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 161.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 161.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 160.9
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 160.7
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 160.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 159.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 159.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 159.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 158.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 158.1
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 157.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 157.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 157.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 156.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 156.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 155.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 153.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 152.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 151.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 150.8
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 150.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 150.2
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 150.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 149.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 149.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 149.1
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 148.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 147.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 147.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 146.8
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 146.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 146.2
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 146.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 144.7
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 144.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 143.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 143.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 142.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 142.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 141.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 141.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 141.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 140.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 140.1
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 138.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 138.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 137.4
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 135.9
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 135.5
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 135.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 134.8
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 134.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 134.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 133.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 132.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 132.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 132.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 131.6
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 130.9
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 130.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 130.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 129.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 129.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 128.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 128.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 127.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 127.6
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 127.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 126.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 126.2
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 126.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 126.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 126.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 125.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 125.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 123.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 122.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 122.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 121.6
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 120.4
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 120.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 118.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 114.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 114.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 113.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 112.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 111.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 110.7
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 109.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 109.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 109.2
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 108.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 106.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 106.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 106.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 105.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 105.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 105.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 103.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 103.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 101.3
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 100.0
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 100.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 96.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 96.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 81.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 67.7
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

325.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 325.6
FF:10169-103B7 60 years, female 421.6
FF:10153-102I9 76 years, female 229.5

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