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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:430.1 nTPM
HPA Brain:191.9 nTPM
GTEx:430.1 nTPM
FANTOM5:57.4 Scaled Tags Per Million
Pig:369.8 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 146.0
1981 Female, age 72, midline 173.8
2194 Female, age 79, both hemispheres 169.7
2816 Male, age 47, midline 168.2
2048 Male, age 55, midline 119.0
2565 Male, age 75, midline 99.1
Cervical spinal cord, dorsal horn
nTPM: 191.9
2296 Male, age 66, both hemispheres 332.4
2173 Female, age 72, unknown 237.2
2069 Male, age 47, both hemispheres 174.8
1877 Male, age 55, unknown 155.6
2297 Male, age 75, both hemispheres 150.9
2721 Male, age 90, both hemispheres 100.2
Cervical spinal cord, ventral horn
nTPM: 164.0
2068 Male, age 55, unknown 195.5
2820 Female, age 79, both hemispheres 185.5
2098 Female, age 72, unknown 154.9
2480 Male, age 75, both hemispheres 153.7
2809 Male, age 90, both hemispheres 153.3
2295 Male, age 66, both hemispheres 140.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

430.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 430.1
Samples: 159

Max nTPM: 1251.5
Min nTPM: 48.1
Std nTPM: 244.0
Median nTPM: 405.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1251.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1218.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 996.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 946.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 910.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 908.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 885.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 878.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 843.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 841.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 806.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 805.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 790.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 785.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 768.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 757.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 751.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 751.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 737.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 733.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 727.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 720.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 713.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 703.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 702.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 700.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 682.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 676.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 673.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 662.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 659.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 631.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 627.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 616.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 608.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 600.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 592.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 591.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 590.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 588.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 581.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 574.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 557.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 549.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 545.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 544.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 543.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 536.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 534.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 533.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 533.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 532.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 521.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 520.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 520.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 510.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 508.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 506.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 480.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 480.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 479.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 478.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 476.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 470.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 460.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 456.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 450.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 448.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 448.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 445.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 441.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 436.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 431.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 425.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 424.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 423.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 411.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 407.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 405.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 405.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 404.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 401.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 400.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 392.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 388.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 385.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 383.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 373.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 373.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 370.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 367.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 365.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 357.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 357.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 353.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 344.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 343.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 339.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 330.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 327.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 319.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 316.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 316.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 314.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 313.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 312.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 310.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 305.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 296.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 292.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 290.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 288.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 286.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 285.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 285.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 273.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 270.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 265.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 265.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 247.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 238.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 231.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 222.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 221.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 212.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 208.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 198.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 187.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 182.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 172.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 162.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 157.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 146.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 142.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 140.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 138.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 138.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 129.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 125.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 125.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 124.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 123.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 120.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 113.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 110.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 102.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 101.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 100.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 99.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 97.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 96.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 93.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 92.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 88.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 83.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 81.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 78.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 49.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 48.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

57.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 57.4
FF:10181-103D1 60 years, female 80.4
FF:10159-103A6 76 years, female 34.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

369.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 293.2
Samples: 4

Max nTPM: 319.9
Min nTPM: 240.6
Sample A Female 303.3
Sample B Female 309.1
Sample C Male 240.6
Sample D Male 319.9
Ventral spinal cord
nTPM: 369.8
Samples: 4

Max nTPM: 451.4
Min nTPM: 324.8
Sample A Female 324.8
Sample B Female 363.2
Sample C Male 339.6
Sample D Male 451.4

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