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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:599.5 nTPM
FANTOM5:1623.7 Scaled Tags Per Million
Pig:407.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA023676
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

599.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 599.5
Samples: 246

Max nTPM: 1603.0
Min nTPM: 61.2
Std nTPM: 340.9
Median nTPM: 575.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1603.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1554.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1335.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1334.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1278.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1262.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1261.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1252.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1244.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1239.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1204.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1203.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1199.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1198.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1193.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1182.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1176.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1168.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1143.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1131.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1130.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1114.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1113.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1112.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1111.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1097.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1096.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1093.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1064.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1039.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1039.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1031.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1029.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1024.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1011.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1004.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 996.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 989.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 972.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 966.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 933.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 928.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 928.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 927.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 920.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 920.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 919.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 916.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 907.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 907.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 880.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 878.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 877.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 876.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 873.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 870.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 864.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 860.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 859.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 857.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 854.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 849.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 848.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 842.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 837.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 834.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 824.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 821.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 815.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 812.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 812.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 796.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 795.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 790.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 781.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 779.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 775.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 770.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 761.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 754.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 752.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 749.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 742.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 734.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 731.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 726.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 724.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 722.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 720.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 720.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 716.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 711.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 711.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 705.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 688.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 687.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 684.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 683.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 679.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 661.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 656.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 653.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 651.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 649.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 646.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 637.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 633.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 628.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 626.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 625.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 623.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 621.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 613.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 612.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 597.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 594.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 589.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 584.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 582.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 581.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 579.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 578.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 578.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 572.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 559.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 558.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 557.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 551.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 546.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 539.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 535.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 532.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 532.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 525.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 523.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 521.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 521.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 518.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 517.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 516.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 516.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 513.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 500.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 491.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 487.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 482.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 477.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 477.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 476.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 470.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 464.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 458.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 457.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 444.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 442.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 439.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 438.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 432.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 431.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 429.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 427.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 417.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 413.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 407.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 396.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 394.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 392.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 389.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 368.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 365.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 359.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 354.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 353.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 340.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 332.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 331.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 329.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 323.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 322.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 320.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 320.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 311.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 300.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 296.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 290.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 288.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 287.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 282.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 279.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 274.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 271.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 270.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 269.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 269.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 265.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 259.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 251.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 248.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 248.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 244.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 235.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 233.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 230.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 226.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 225.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 225.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 219.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 218.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 214.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 207.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 206.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 204.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 204.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 193.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 193.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 187.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 185.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 180.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 178.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 178.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 177.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 176.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 173.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 168.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 164.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 164.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 158.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 149.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 146.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 146.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 141.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 138.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 136.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 132.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 130.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 126.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 118.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 114.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 112.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 111.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 98.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 74.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 67.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 64.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 64.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 61.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1623.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1623.7
FF:10164-103B2 76 years, female 1623.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

407.6
Pig sample Sample description nTPM
Caudate
nTPM: 407.7
Samples: 4

Max nTPM: 501.0
Min nTPM: 271.5
Sample A Female 271.5
Sample B Female 426.1
Sample C Male 501.0
Sample D Male 432.0

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