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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:83.7 nTPM
HPA Brain:127.2 nTPM
GTEx:83.7 nTPM
FANTOM5:30.2 Scaled Tags Per Million
Pig:106.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 102.6
2565 Male, age 75, midline 115.4
2048 Male, age 55, midline 109.2
2816 Male, age 47, midline 102.4
2194 Female, age 79, both hemispheres 95.6
1981 Female, age 72, midline 90.4
Cervical spinal cord, dorsal horn
nTPM: 74.2
2173 Female, age 72, unknown 101.9
2296 Male, age 66, both hemispheres 94.3
2069 Male, age 47, both hemispheres 75.5
1877 Male, age 55, unknown 71.0
2721 Male, age 90, both hemispheres 59.9
2297 Male, age 75, both hemispheres 42.8
Cervical spinal cord, ventral horn
nTPM: 127.2
2480 Male, age 75, both hemispheres 167.1
2809 Male, age 90, both hemispheres 161.0
2295 Male, age 66, both hemispheres 115.7
2820 Female, age 79, both hemispheres 111.5
2098 Female, age 72, unknown 108.8
2068 Male, age 55, unknown 99.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 83.7
Samples: 159

Max nTPM: 335.1
Min nTPM: 15.3
Std nTPM: 44.9
Median nTPM: 74.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 335.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 241.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 223.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 209.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 197.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 197.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 193.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 181.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 166.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 153.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 142.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 142.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 135.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 135.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 130.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 129.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 127.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 124.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 124.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 120.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 120.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 119.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 118.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 118.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 117.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 117.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 117.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 116.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 116.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 114.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 113.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 113.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 110.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 110.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 108.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 108.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 107.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 107.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 104.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 103.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 103.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 102.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 101.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 100.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 100.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 99.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 98.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 98.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 97.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 97.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 97.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 94.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 93.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 92.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 91.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 87.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 87.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 86.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 86.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 86.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 85.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 84.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 83.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 82.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 81.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 81.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 80.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 80.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 79.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 79.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 77.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 77.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 77.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 76.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 76.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 75.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 75.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 75.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 74.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 74.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 73.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 73.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 73.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 72.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 72.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 71.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 71.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 71.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 71.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 70.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 70.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 70.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 69.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 69.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 67.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 67.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 66.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 65.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 65.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 64.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 63.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 62.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 62.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 61.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 61.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 60.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 60.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 59.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 58.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 58.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 58.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 58.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 56.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 55.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 54.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 54.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 54.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 53.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 52.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 51.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 51.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 51.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 50.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 49.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 49.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 49.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 49.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 49.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 49.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 48.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 48.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 47.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 47.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 46.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 46.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 45.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 45.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 44.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 43.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 40.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 40.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 40.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 40.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 40.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 39.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 38.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 38.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 38.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 35.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 35.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 34.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 33.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 33.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 31.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 30.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 25.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 22.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 15.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 15.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

30.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 30.2
FF:10181-103D1 60 years, female 40.8
FF:10159-103A6 76 years, female 19.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 79.5
Samples: 4

Max nTPM: 97.2
Min nTPM: 64.6
Sample A Female 64.6
Sample B Female 75.5
Sample C Male 80.5
Sample D Male 97.2
Ventral spinal cord
nTPM: 106.3
Samples: 4

Max nTPM: 167.0
Min nTPM: 82.4
Sample A Female 89.7
Sample B Female 85.9
Sample C Male 82.4
Sample D Male 167.0

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