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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:138.6 nTPM
HPA Brain:101.1 nTPM
GTEx:138.6 nTPM
FANTOM5:105.7 Scaled Tags Per Million
Pig:52.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 95.1
1981 Female, age 72, midline 119.3
2816 Male, age 47, midline 96.5
2048 Male, age 55, midline 94.0
2194 Female, age 79, both hemispheres 83.9
2565 Male, age 75, midline 81.6
Cervical spinal cord, dorsal horn
nTPM: 97.7
2173 Female, age 72, unknown 135.7
2296 Male, age 66, both hemispheres 130.2
2069 Male, age 47, both hemispheres 93.3
1877 Male, age 55, unknown 86.5
2721 Male, age 90, both hemispheres 70.7
2297 Male, age 75, both hemispheres 70.0
Cervical spinal cord, ventral horn
nTPM: 101.1
2098 Female, age 72, unknown 132.4
2809 Male, age 90, both hemispheres 108.5
2480 Male, age 75, both hemispheres 105.3
2068 Male, age 55, unknown 92.7
2295 Male, age 66, both hemispheres 89.9
2820 Female, age 79, both hemispheres 78.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 138.6
Samples: 159

Max nTPM: 206.5
Min nTPM: 72.9
Std nTPM: 25.6
Median nTPM: 141.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 206.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 203.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 192.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 186.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 185.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 183.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 182.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 180.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 180.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 179.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 178.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 176.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 172.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 171.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 169.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 168.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 167.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 167.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 167.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 166.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 164.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 163.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 163.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 162.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 161.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 161.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 161.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 160.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 160.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 159.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 159.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 159.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 158.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 158.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 157.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 157.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 157.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 156.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 155.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 155.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 155.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 155.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 155.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 154.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 154.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 153.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 153.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 152.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 152.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 151.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 151.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 150.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 150.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 150.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 150.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 149.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 149.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 149.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 149.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 148.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 148.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 148.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 148.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 147.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 146.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 146.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 146.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 145.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 145.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 145.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 144.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 144.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 144.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 144.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 143.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 142.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 142.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 142.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 142.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 141.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 141.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 141.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 140.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 140.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 139.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 139.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 138.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 137.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 137.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 136.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 135.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 135.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 134.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 134.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 134.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 134.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 134.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 134.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 134.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 133.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 133.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 131.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 131.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 131.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 131.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 131.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 129.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 127.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 127.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 125.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 125.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 124.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 124.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 123.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 123.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 123.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 122.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 121.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 121.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 121.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 121.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 119.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 119.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 118.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 117.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 116.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 116.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 114.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 113.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 113.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 112.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 112.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 110.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 110.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 108.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 107.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 107.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 105.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 103.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 103.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 103.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 103.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 102.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 102.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 100.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 100.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 99.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 99.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 97.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 95.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 93.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 92.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 91.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 90.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 89.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 88.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 85.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 85.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 72.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

105.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 105.7
FF:10181-103D1 60 years, female 110.9
FF:10159-103A6 76 years, female 100.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 50.5
Samples: 4

Max nTPM: 57.3
Min nTPM: 46.0
Sample A Female 57.3
Sample B Female 46.2
Sample C Male 46.0
Sample D Male 52.6
Ventral spinal cord
nTPM: 52.5
Samples: 4

Max nTPM: 55.0
Min nTPM: 48.4
Sample A Female 51.7
Sample B Female 54.8
Sample C Male 55.0
Sample D Male 48.4

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