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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:93.3 nTPM
GTEx:93.3 nTPM
FANTOM5:64.5 Scaled Tags Per Million
Pig:143.2 nTPM
Mouse:99.8 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 93.3
Samples: 105

Max nTPM: 163.9
Min nTPM: 59.0
Std nTPM: 17.7
Median nTPM:
322_1 76 years, male 163.9
177_1 74 years, male 145.0
237_1 82 years, male 137.7
172_1 72 years, female 133.7
386_1 76 years, male 132.4
480_1 63 years, male 130.7
468_1 89 years, male 125.8
350_1 84 years, female 124.9
319_1 81 years, male 122.7
120_1 70 years, female 121.6
264_1 73 years, female 116.9
324_1 76 years, male 116.6
425_1 59 years, female 116.1
229_1 69 years, female 112.0
415_1 77 years, female 108.5
6_1 73 years, female 107.5
447_1 81 years, male 107.2
307_1 66 years, female 107.0
2_1 77 years, female 105.9
9_1 66 years, female 105.3
490_1 67 years, female 102.9
218_1 71 years, female 101.7
173_1 67 years, male 101.1
355_1 70 years, female 101.1
293_1 68 years, female 100.9
352_1 62 years, male 100.9
335_1 73 years, female 100.6
117_1 61 years, male 100.2
266_1 85 years, male 100.2
251_1 78 years, male 100.0
115_1 83 years, male 98.9
375_1 74 years, female 98.6
406_1 79 years, male 97.8
313_1 79 years, female 97.2
414_1 84 years, female 96.5
311_1 78 years, male 96.2
376_1 75 years, female 95.8
126_1 63 years, male 95.7
315_1 62 years, female 95.3
347_1 72 years, male 95.3
503_1 68 years, male 94.9
119_1 70 years, female 94.8
246_1 77 years, male 94.4
318_1 68 years, male 94.0
526_1 61 years, male 93.5
163_1 78 years, male 93.4
349_1 83 years, male 93.3
286_1 68 years, female 93.2
356_1 87 years, female 93.0
404_1 82 years, female 93.0
348_1 84 years, male 92.8
292_1 71 years, male 92.6
320_1 89 years, female 91.2
466_1 57 years, female 90.9
243_1 75 years, male 90.1
99_1 64 years, male 89.0
137_1 83 years, male 88.9
394_1 75 years, female 88.3
153_1 70 years, female 87.8
379_1 60 years, male 87.3
389_1 86 years, female 87.3
405_1 91 years, male 87.3
42_1 85 years, male 86.9
321_1 62 years, female 86.9
43_1 64 years, female 85.4
317_1 60 years, male 85.0
18_1 88 years, male 84.9
351_1 91 years, male 84.8
81_1 67 years, male 83.7
142_1 61 years, female 83.4
145_1 84 years, male 83.2
32_1 67 years, male 83.0
35_1 74 years, female 83.0
316_1 62 years, male 83.0
517_1 88 years, male 82.7
217_1 76 years, male 81.9
377_1 82 years, female 81.5
354_1 81 years, female 81.3
291_1 76 years, male 80.6
353_1 82 years, female 80.3
499_1 55 years, female 80.2
162_1 79 years, female 80.1
109_1 81 years, female 79.5
413_1 59 years, female 79.1
265_1 87 years, male 79.0
518_1 75 years, female 78.9
189_1 76 years, male 78.6
41_1 94 years, female 78.5
506_1 65 years, male 77.9
288_1 66 years, female 77.1
139_1 64 years, female 77.0
254_1 77 years, female 76.3
384_1 83 years, male 76.1
491_1 89 years, female 75.9
149_1 88 years, male 75.8
396_1 62 years, male 75.5
452_1 88 years, female 74.9
89_1 63 years, male 74.6
495_1 57 years, female 72.2
314_1 67 years, male 69.3
17_1 71 years, male 68.7
295_1 61 years, female 68.2
4_1 88 years, female 68.1
501_1 88 years, male 67.7
308_1 70 years, female 59.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

64.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 64.5
FF:10030-101E3 24-65 years, mixed 64.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.2
Pig sample Sample description nTPM
Retina
nTPM: 143.2
Samples: 4

Max nTPM: 177.5
Min nTPM: 127.0
Sample A Female 136.3
Sample B Female 127.0
Sample C Male 177.5
Sample D Male 132.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.8
Mouse sample Sample description nTPM
Retina
nTPM: 99.9
Samples: 4

Max nTPM: 115.5
Min nTPM: 80.1
Sample A Male 93.9
Sample B Male 109.9
Sample C Female 80.1
Sample D Female 115.5

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