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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:155.2 nTPM
GTEx:155.2 nTPM
FANTOM5:138.4 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA039223Antibody HPA040781
Squamous epithelial cells MediumMedium


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

155.2
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 155.2
Samples: 156

Max nTPM: 409.6
Min nTPM: 69.8
Std nTPM: 46.2
Median nTPM: 145.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 409.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 290.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 278.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 260.4
GTEX-14PKU-1326-SM-6871B 40-49 years, female 241.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 239.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 235.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 232.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 230.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 221.0
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 220.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 215.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 215.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 214.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 209.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 207.6
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 201.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 201.3
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 201.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 201.1
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 201.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 199.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 197.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 196.5
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 196.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 195.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 194.5
GTEX-11I78-2026-SM-5987C 50-59 years, female 193.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 192.0
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 188.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 187.9
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 186.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 184.9
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 184.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 184.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 184.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 183.9
GTEX-1C475-0526-SM-793AC 40-49 years, female 183.8
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 182.6
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 182.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 182.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 180.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 179.9
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 179.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 178.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 177.1
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 176.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 175.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 175.5
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 174.2
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 174.0
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 173.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 171.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 171.5
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 170.8
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 168.4
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 168.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 168.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 167.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 167.0
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 165.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 164.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 163.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 162.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 160.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 158.7
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 157.4
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 156.8
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 156.1
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 155.6
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 153.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 153.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 153.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 147.9
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 147.7
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 147.6
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 146.4
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 146.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 145.7
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 145.7
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 145.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 145.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 144.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 144.5
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 143.6
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 143.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 143.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 142.9
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 142.6
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 142.4
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 142.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 141.5
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 141.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 141.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 140.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 140.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 139.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 139.4
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 137.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 137.0
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 136.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 136.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 135.9
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 134.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 134.1
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 132.7
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 132.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 132.2
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 130.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 128.7
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 128.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 128.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 127.9
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 126.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 126.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 126.2
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 125.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 125.0
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 124.6
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 123.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 123.6
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 122.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 121.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 120.9
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 118.9
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 118.5
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 116.3
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 115.8
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 115.2
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 114.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 113.1
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 112.9
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 109.5
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 108.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 108.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 106.1
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 103.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 101.2
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 100.7
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 100.0
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 99.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 97.7
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 97.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 96.6
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 95.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 94.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 93.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 92.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 92.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 87.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 87.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 86.4
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 85.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 80.5
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 76.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 69.8
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

138.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 138.4
FF:10204-103F6 68 years, female 138.4

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