MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.1 nTPM
HPA Brain:59.4 nTPM
GTEx:14.1 nTPM
FANTOM5:43.7 Scaled Tags Per Million
Pig:42.0 nTPM
Mouse:43.8 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 59.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.8
2586 Male, age 75, left hemisphere 69.3
1827 Male, age 72, unknown 56.6
2828 Female, age 72, unknown 55.2
2019 Male, age 18, unknown 54.4
1870 Female, age 42, unknown 51.2
2219 Male, age 76, both hemispheres 47.0
2411 Female, age 72, unknown 45.8
1830 Male, age 51, unknown 45.5
2666 Male, age 74, left hemisphere 42.7
1833 Male, age 53, unknown 40.5
Dorsal raphe nucleus
nTPM: 46.4
2298 Female, age 72, unknown 48.9
2047 Male, age 72, unknown 47.9
2750 Male, age 76, both hemispheres 46.8
1828 Male, age 53, unknown 44.8
2016 Female, age 72, unknown 43.8
Inferior colliculus
nTPM: 55.5
2097 Female, age 72, unknown 72.5
1890 Male, age 53, unknown 54.8
1848 Female, age 42, unknown 50.4
2849 Male, age 72, unknown 44.2
Median raphe nucleus
nTPM: 47.8
2220 Male, age 76, midline 47.8
Periaquaductal grey, anterior
nTPM: 54.9
2502 Female, age 75, unknown 57.2
1947 Male, age 18, unknown 55.9
1795 Male, age 51, unknown 51.6
Periaquaductal grey, dorsal
nTPM: 44.5
2464 Female, age 72, unknown 46.6
1831 Male, age 72, unknown 44.1
2850 Male, age 76, both hemispheres 44.1
1840 Male, age 53, unknown 43.2
Periaquaductal grey, lateral
nTPM: 40.3
2053 Male, age 18, unknown 47.2
2140 Male, age 76, both hemispheres 44.5
2272 Male, age 74, both hemispheres 29.0
Pretectal area
nTPM: 51.5
1816 Male, age 51, unknown 67.6
2007 Male, age 72, unknown 63.6
1944 Female, age 72, unknown 57.7
1817 Female, age 42, unknown 57.2
1815 Male, age 53, unknown 56.1
2316 Male, age 76, right hemisphere 51.8
2825 Male, age 18, unknown 47.7
2667 Female, age 75, unknown 46.1
2224 Female, age 72, unknown 41.1
2407 Male, age 75, both hemispheres 41.0
2273 Male, age 74, both hemispheres 36.6
Red nucleus
nTPM: 59.4
2588 Male, age 74, left hemisphere 86.2
2503 Female, age 72, unknown 73.8
1821 Female, age 72, unknown 67.4
2227 Male, age 72, unknown 59.9
1954 Female, age 42, unknown 58.2
2769 Male, age 72, unknown 57.7
1904 Male, age 53, unknown 56.7
1865 Male, age 51, unknown 55.2
2823 Male, age 76, right hemisphere 53.5
2785 Male, age 18, unknown 53.2
2584 Male, age 75, left hemisphere 47.3
2725 Female, age 75, unknown 43.3
Substantia nigra
nTPM: 49.0
1916 Female, age 42, unknown 62.9
1889 Female, age 72, unknown 57.0
1851 Male, age 51, unknown 53.0
2583 Male, age 75, right hemisphere 52.7
2241 Male, age 72, unknown 49.1
1941 Male, age 53, unknown 47.9
2665 Male, age 74, both hemispheres 47.7
2409 Female, age 72, unknown 40.7
2699 Male, age 18, unknown 40.6
2590 Female, age 75, unknown 38.4
Superior colliculus
nTPM: 58.2
2668 Female, age 75, unknown 101.3
2087 Female, age 72, unknown 60.3
2261 Male, age 18, unknown 59.8
1796 Male, age 53, unknown 57.2
2664 Male, age 75, both hemispheres 55.6
1913 Female, age 42, unknown 51.0
1895 Male, age 76, right hemisphere 50.8
2587 Male, age 74, left hemisphere 50.3
1839 Male, age 51, unknown 48.7
1995 Male, age 72, unknown 47.2
Ventral tegmental area
nTPM: 51.4
2021 Male, age 53, unknown 62.7
1915 Female, age 42, unknown 53.4
2218 Male, age 76, both hemispheres 50.8
1942 Male, age 51, unknown 50.6
2410 Female, age 72, unknown 50.5
2223 Female, age 72, unknown 40.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.1
Samples: 139

Max nTPM: 34.7
Min nTPM: 7.7
Std nTPM: 3.4
Median nTPM: 13.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 34.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 23.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 22.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 21.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 20.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 20.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 19.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 18.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 18.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 18.6
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 18.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.7
FF:10158-103A5 76 years, female 43.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 42.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.6
Samples: 4

Max nTPM: 41.3
Min nTPM: 36.4
Sample A Female 37.7
Sample B Female 36.4
Sample C Male 41.3
Sample D Male 39.1
Midbrain
nTPM: 41.2
Samples: 4

Max nTPM: 51.9
Min nTPM: 35.4
Sample A Female 36.1
Sample B Female 35.4
Sample C Male 51.9
Sample D Male 41.4
Periaqueductal gray
nTPM: 35.9
Samples: 3

Max nTPM: 38.0
Min nTPM: 34.5
Sample B Female 34.5
Sample C Male 38.0
Sample D Male 35.3
Superior colliculi
nTPM: 42.0
Samples: 4

Max nTPM: 46.3
Min nTPM: 39.4
Sample A Female 39.7
Sample B Female 39.4
Sample C Male 46.3
Sample D Male 42.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 43.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.8
Samples: 4

Max nTPM: 51.1
Min nTPM: 35.4
Sample A Male 35.4
Sample B Male 43.4
Sample C Female 51.1
Sample D Female 45.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
75043159 Antisense, RP_060412_05_B10, Mouse strain C57BL/6J (56 days, male) 0.4
71998949 Antisense, RP_050915_02_C06, Mouse strain C57BL/6J (56 days, male) 0.1

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