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VIM
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  • VIM
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

VIM
Synonyms
Gene descriptioni

Full gene name according to HGNC.

Vimentin
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 10
Cytoband p13
Chromosome location (bp) 17228241 - 17237593
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000026025 (version 109)
Entrez gene 7431
HGNC HGNC:12692
UniProt P08670 (UniProt - Evidence at protein level)
neXtProt NX_P08670
GeneCards VIM
Antibodypedia VIM antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Vimentins are class-III intermediate filaments found in various non-epithelial cells, especially mesenchymal cells. Vimentin is attached to the nucleus, endoplasmic reticulum, and mitochondria, either laterally or terminally.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Host-virus interaction
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a type III intermediate filament protein. Intermediate filaments, along with microtubules and actin microfilaments, make up the cytoskeleton. The encoded protein is responsible for maintaining cell shape and integrity of the cytoplasm, and stabilizing cytoskeletal interactions. This protein is involved in neuritogenesis and cholesterol transport and functions as an organizer of a number of other critical proteins involved in cell attachment, migration, and signaling. Bacterial and viral pathogens have been shown to attach to this protein on the host cell surface. Mutations in this gene are associated with congenital cataracts in human patients. [provided by RefSeq, Aug 2017]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
VIM-201
ENSP00000224237
ENST00000224237
P08670
[Direct mapping] Vimentin
Show all
V9HWE1
[Target identity:100%; Query identity:100%] Vimentin
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Human disease related genes
   Nervous system diseases
   Eye disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003725 [double-stranded RNA binding]
GO:0005200 [structural constituent of cytoskeleton]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005777 [peroxisome]
GO:0005815 [microtubule organizing center]
GO:0005829 [cytosol]
GO:0005844 [polysome]
GO:0005856 [cytoskeleton]
GO:0005882 [intermediate filament]
GO:0005886 [plasma membrane]
GO:0005925 [focal adhesion]
GO:0016020 [membrane]
GO:0016363 [nuclear matrix]
GO:0019904 [protein domain specific binding]
GO:0030424 [axon]
GO:0032967 [positive regulation of collagen biosynthetic process]
GO:0042802 [identical protein binding]
GO:0043488 [regulation of mRNA stability]
GO:0045109 [intermediate filament organization]
GO:0045111 [intermediate filament cytoskeleton]
GO:0045727 [positive regulation of translation]
GO:0060090 [molecular adaptor activity]
GO:0070062 [extracellular exosome]
GO:0071222 [cellular response to lipopolysaccharide]
GO:0071225 [cellular response to muramyl dipeptide]
GO:0097110 [scaffold protein binding]
GO:1990254 [keratin filament binding]
GO:1990904 [ribonucleoprotein complex]
Show all
466 aa
53.7 kDa
No 0
VIM-204
ENSP00000489830
ENST00000478746
A0A1B0GTT5
[Direct mapping] Vimentin
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Eye disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005882 [intermediate filament]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
GO:0016363 [nuclear matrix]
Show all
149 aa
16.4 kDa
No 0
VIM-208
ENSP00000490509
ENST00000497849
A0A1B0GVG8
[Direct mapping] Vimentin
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Eye disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005882 [intermediate filament]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
GO:0016363 [nuclear matrix]
Show all
109 aa
11.8 kDa
No 0
VIM-209
ENSP00000446007
ENST00000544301
P08670
[Direct mapping] Vimentin
Show all
V9HWE1
[Target identity:100%; Query identity:100%] Vimentin
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Human disease related genes
   Nervous system diseases
   Eye disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003723 [RNA binding]
GO:0003725 [double-stranded RNA binding]
GO:0005200 [structural constituent of cytoskeleton]
GO:0005212 [structural constituent of eye lens]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005777 [peroxisome]
GO:0005815 [microtubule organizing center]
GO:0005829 [cytosol]
GO:0005844 [polysome]
GO:0005856 [cytoskeleton]
GO:0005882 [intermediate filament]
GO:0005886 [plasma membrane]
GO:0005925 [focal adhesion]
GO:0010628 [positive regulation of gene expression]
GO:0010977 [negative regulation of neuron projection development]
GO:0014002 [astrocyte development]
GO:0016020 [membrane]
GO:0016363 [nuclear matrix]
GO:0019904 [protein domain specific binding]
GO:0030424 [axon]
GO:0031175 [neuron projection development]
GO:0031252 [cell leading edge]
GO:0032967 [positive regulation of collagen biosynthetic process]
GO:0042802 [identical protein binding]
GO:0042995 [cell projection]
GO:0043005 [neuron projection]
GO:0043488 [regulation of mRNA stability]
GO:0045103 [intermediate filament-based process]
GO:0045109 [intermediate filament organization]
GO:0045111 [intermediate filament cytoskeleton]
GO:0045335 [phagocytic vesicle]
GO:0045727 [positive regulation of translation]
GO:0060020 [Bergmann glial cell differentiation]
GO:0060090 [molecular adaptor activity]
GO:0060395 [SMAD protein signal transduction]
GO:0070062 [extracellular exosome]
GO:0070307 [lens fiber cell development]
GO:0071222 [cellular response to lipopolysaccharide]
GO:0071225 [cellular response to muramyl dipeptide]
GO:0071346 [cellular response to interferon-gamma]
GO:0097110 [scaffold protein binding]
GO:1990254 [keratin filament binding]
GO:1990904 [ribonucleoprotein complex]
Show all
466 aa
53.7 kDa
No 0

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