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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:37.1 nTPM
HPA Brain:91.6 nTPM
GTEx:37.1 nTPM
FANTOM5:90.1 Scaled Tags Per Million
Pig:72.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 76.4
2048 Male, age 55, midline 91.2
1981 Female, age 72, midline 82.1
2816 Male, age 47, midline 76.3
2194 Female, age 79, both hemispheres 75.0
2565 Male, age 75, midline 57.2
Cervical spinal cord, dorsal horn
nTPM: 91.6
2296 Male, age 66, both hemispheres 130.5
2173 Female, age 72, unknown 106.9
1877 Male, age 55, unknown 97.4
2069 Male, age 47, both hemispheres 88.3
2297 Male, age 75, both hemispheres 66.5
2721 Male, age 90, both hemispheres 60.3
Cervical spinal cord, ventral horn
nTPM: 84.5
2068 Male, age 55, unknown 96.3
2820 Female, age 79, both hemispheres 87.9
2098 Female, age 72, unknown 86.7
2809 Male, age 90, both hemispheres 82.3
2480 Male, age 75, both hemispheres 80.8
2295 Male, age 66, both hemispheres 73.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 37.1
Samples: 159

Max nTPM: 89.3
Min nTPM: 6.4
Std nTPM: 14.9
Median nTPM: 36.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 89.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 77.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 68.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 65.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 63.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 63.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 62.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 62.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 61.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 59.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 59.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 59.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 59.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 59.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 58.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 58.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 58.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 58.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 57.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 57.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 56.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 55.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 54.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 54.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 54.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 53.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 53.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 52.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 51.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 50.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 50.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 49.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 49.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 49.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 48.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 48.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 47.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 47.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 47.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 47.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 47.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 47.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 46.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 45.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 44.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 44.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 44.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 44.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 44.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 44.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 43.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 43.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 43.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 42.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 42.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 42.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 42.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 41.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 41.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 41.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 41.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 41.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 41.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 40.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 39.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 39.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 39.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 39.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 38.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 38.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 37.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 37.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 37.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 37.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 37.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 36.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 36.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 36.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 36.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 36.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 36.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 36.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 36.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 35.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 35.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 35.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 34.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 34.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 34.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 33.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 33.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 33.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 32.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 32.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 32.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 31.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 31.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 31.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 30.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 30.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 29.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 29.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 29.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 29.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 28.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 28.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 27.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 27.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 27.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 27.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 27.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 26.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 26.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 26.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 26.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 26.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 25.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 25.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 25.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 24.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 24.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 24.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 24.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 23.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 23.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 23.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 23.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 23.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 23.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 23.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 23.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 22.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 22.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 22.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 22.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 22.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 22.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 21.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 21.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 20.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 20.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 20.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 19.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 19.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 18.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 18.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 17.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 17.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 17.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 16.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 15.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 14.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 13.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 13.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 13.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 12.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 10.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 6.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 6.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

90.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 90.1
FF:10181-103D1 60 years, female 103.3
FF:10159-103A6 76 years, female 76.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 72.9
Samples: 4

Max nTPM: 91.1
Min nTPM: 55.9
Sample A Female 63.7
Sample B Female 80.7
Sample C Male 91.1
Sample D Male 55.9
Ventral spinal cord
nTPM: 65.0
Samples: 4

Max nTPM: 77.6
Min nTPM: 57.2
Sample A Female 77.6
Sample B Female 59.3
Sample C Male 57.2
Sample D Male 66.0

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