MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:389.7 nTPM
HPA Brain:234.8 nTPM
GTEx:389.7 nTPM
FANTOM5:175.7 Scaled Tags Per Million
Pig:272.9 nTPM
Mouse:193.6 nTPM
Allen mouse:5.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 234.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 193.8
2411 Female, age 72, unknown 240.8
1870 Female, age 42, unknown 220.3
2019 Male, age 18, unknown 219.0
1827 Male, age 72, unknown 217.6
2828 Female, age 72, unknown 203.1
1833 Male, age 53, unknown 183.8
1830 Male, age 51, unknown 173.9
2666 Male, age 74, left hemisphere 166.0
2219 Male, age 76, both hemispheres 160.2
2586 Male, age 75, left hemisphere 153.1
Dorsal raphe nucleus
nTPM: 234.8
2298 Female, age 72, unknown 297.3
2016 Female, age 72, unknown 229.6
2047 Male, age 72, unknown 219.4
1828 Male, age 53, unknown 214.2
2750 Male, age 76, both hemispheres 213.7
Inferior colliculus
nTPM: 207.5
2097 Female, age 72, unknown 262.9
1890 Male, age 53, unknown 203.0
1848 Female, age 42, unknown 196.8
2849 Male, age 72, unknown 167.4
Median raphe nucleus
nTPM: 202.2
2220 Male, age 76, midline 202.2
Periaquaductal grey, anterior
nTPM: 214.6
2502 Female, age 75, unknown 226.4
1947 Male, age 18, unknown 219.3
1795 Male, age 51, unknown 198.1
Periaquaductal grey, dorsal
nTPM: 202.1
1840 Male, age 53, unknown 231.9
2464 Female, age 72, unknown 203.1
1831 Male, age 72, unknown 187.9
2850 Male, age 76, both hemispheres 185.5
Periaquaductal grey, lateral
nTPM: 192.2
2053 Male, age 18, unknown 215.5
2272 Male, age 74, both hemispheres 183.4
2140 Male, age 76, both hemispheres 177.8
Pretectal area
nTPM: 232.5
1816 Male, age 51, unknown 257.8
1944 Female, age 72, unknown 252.0
2667 Female, age 75, unknown 249.8
1817 Female, age 42, unknown 247.0
2273 Male, age 74, both hemispheres 245.6
2007 Male, age 72, unknown 241.8
1815 Male, age 53, unknown 239.7
2224 Female, age 72, unknown 225.2
2316 Male, age 76, right hemisphere 213.0
2407 Male, age 75, both hemispheres 193.4
2825 Male, age 18, unknown 192.0
Red nucleus
nTPM: 206.1
1821 Female, age 72, unknown 278.0
1954 Female, age 42, unknown 223.3
1904 Male, age 53, unknown 219.0
2823 Male, age 76, right hemisphere 216.5
2503 Female, age 72, unknown 214.2
1865 Male, age 51, unknown 211.7
2769 Male, age 72, unknown 205.7
2785 Male, age 18, unknown 199.9
2227 Male, age 72, unknown 199.3
2725 Female, age 75, unknown 186.7
2588 Male, age 74, left hemisphere 167.3
2584 Male, age 75, left hemisphere 151.8
Substantia nigra
nTPM: 215.5
2241 Male, age 72, unknown 276.6
1916 Female, age 42, unknown 246.3
1889 Female, age 72, unknown 239.2
1851 Male, age 51, unknown 237.3
2409 Female, age 72, unknown 228.4
1941 Male, age 53, unknown 202.3
2590 Female, age 75, unknown 190.8
2699 Male, age 18, unknown 186.4
2665 Male, age 74, both hemispheres 177.7
2583 Male, age 75, right hemisphere 169.9
Superior colliculus
nTPM: 210.5
2587 Male, age 74, left hemisphere 228.3
1895 Male, age 76, right hemisphere 227.5
2668 Female, age 75, unknown 224.4
2261 Male, age 18, unknown 224.0
2087 Female, age 72, unknown 213.7
1796 Male, age 53, unknown 208.5
1913 Female, age 42, unknown 206.3
1995 Male, age 72, unknown 192.2
1839 Male, age 51, unknown 190.6
2664 Male, age 75, both hemispheres 188.9
Ventral tegmental area
nTPM: 208.8
2410 Female, age 72, unknown 236.7
1915 Female, age 42, unknown 224.8
1942 Male, age 51, unknown 212.1
2021 Male, age 53, unknown 196.8
2218 Male, age 76, both hemispheres 193.7
2223 Female, age 72, unknown 188.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 389.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 389.7
Samples: 139

Max nTPM: 649.2
Min nTPM: 262.7
Std nTPM: 69.3
Median nTPM: 379.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 649.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 590.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 590.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 565.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 536.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 533.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 519.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 512.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 506.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 497.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 494.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 175.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 175.7
FF:10158-103A5 76 years, female 175.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 272.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 235.7
Samples: 4

Max nTPM: 322.1
Min nTPM: 185.4
Sample A Female 322.1
Sample B Female 185.4
Sample C Male 214.7
Sample D Male 220.6
Midbrain
nTPM: 273.0
Samples: 4

Max nTPM: 370.3
Min nTPM: 207.4
Sample A Female 370.3
Sample B Female 242.8
Sample C Male 271.4
Sample D Male 207.4
Periaqueductal gray
nTPM: 184.6
Samples: 3

Max nTPM: 191.4
Min nTPM: 178.3
Sample B Female 191.4
Sample C Male 184.2
Sample D Male 178.3
Superior colliculi
nTPM: 257.7
Samples: 4

Max nTPM: 311.6
Min nTPM: 187.6
Sample A Female 291.1
Sample B Female 187.6
Sample C Male 311.6
Sample D Male 240.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 193.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 193.6
Samples: 4

Max nTPM: 202.3
Min nTPM: 189.2
Sample A Male 202.3
Sample B Male 190.5
Sample C Female 192.4
Sample D Female 189.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
68637778 Antisense, RP_050126_01_F01, Mouse strain C57BL/6J (56 days, male) 5.6

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