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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:136.9 nTPM
HPA Brain:318.0 nTPM
GTEx:136.9 nTPM
FANTOM5:445.1 Scaled Tags Per Million
Pig:233.2 nTPM
Mouse:215.8 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

318.0
Sample id Sample description nTPM
Amygdala
nTPM: 254.0
1987 Female, age 91, left hemisphere 320.0
2814 Male, age 76, right hemisphere 256.6
2517 Female, age 94, left hemisphere 253.9
2514 Male, age 75, right hemisphere 235.0
2695 Female, age 67, right hemisphere 204.6
Basal amygdala
nTPM: 297.3
2110 Male, age 80, left hemisphere 398.3
2243 Female, age 91, right hemisphere 363.5
2685 Female, age 94, left hemisphere 278.3
1955 Male, age 76, both hemispheres 268.8
2827 Female, age 67, right hemisphere 241.6
2609 Male, age 75, right hemisphere 233.4
Central amygdala
nTPM: 264.6
2239 Male, age 80, left hemisphere 349.2
1905 Male, age 76, both hemispheres 257.3
2826 Female, age 94, left hemisphere 248.3
2701 Female, age 91, right hemisphere 235.4
2515 Male, age 75, right hemisphere 232.9
Corticomedial amygdala
nTPM: 318.0
2829 Male, age 80, left hemisphere 431.4
2242 Female, age 91, right hemisphere 405.2
2240 Male, age 76, both hemispheres 309.3
2535 Female, age 67, right hemisphere 277.4
2429 Female, age 94, left hemisphere 263.4
2428 Male, age 75, right hemisphere 221.3
Lateral amygdala
nTPM: 226.0
2255 Female, age 91, right hemisphere 251.4
1883 Male, age 76, both hemispheres 245.9
2830 Female, age 67, right hemisphere 234.9
2256 Male, age 80, left hemisphere 219.4
2516 Male, age 75, right hemisphere 211.9
2534 Female, age 94, left hemisphere 192.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 136.9
Samples: 152

Max nTPM: 277.8
Min nTPM: 42.9
Std nTPM: 35.4
Median nTPM: 136.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 277.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 277.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 246.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 245.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 226.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 221.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 201.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 190.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 187.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 186.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 182.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 181.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 178.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 177.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 176.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 175.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 173.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 171.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 170.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 168.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 167.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 166.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 165.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 164.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 164.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 164.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 161.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 160.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 160.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 160.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 159.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 159.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 157.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 156.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 156.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 156.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 155.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 153.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 153.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 153.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 152.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 152.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 150.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 150.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 149.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 149.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 146.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 146.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 146.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 146.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 146.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 144.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 144.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 144.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 144.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 143.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 142.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 142.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 142.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 141.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 140.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 140.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 140.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 139.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 139.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 139.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 139.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 139.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 139.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 138.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 138.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 138.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 137.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 137.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 137.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 136.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 136.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 135.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 135.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 134.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 134.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 133.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 133.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 132.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 131.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 131.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 131.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 130.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 129.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 127.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 126.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 125.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 125.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 124.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 124.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 124.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 122.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 122.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 122.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 121.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 120.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 120.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 119.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 119.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 118.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 117.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 117.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 117.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 116.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 116.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 115.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 115.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 115.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 114.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 111.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 111.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 111.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 110.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 110.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 110.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 109.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 106.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 106.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 106.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 106.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 105.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 104.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 104.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 103.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 102.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 101.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 100.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 98.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 98.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 97.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 96.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 96.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 95.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 94.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 94.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 93.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 93.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 92.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 90.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 89.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 89.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 86.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 86.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 83.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 82.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 79.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 42.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

445.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 445.1
FF:10151-102I7 76 years, female 445.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

233.2
Pig sample Sample description nTPM
Amygdala
nTPM: 233.2
Samples: 4

Max nTPM: 313.8
Min nTPM: 176.2
Sample A Female 313.8
Sample B Female 176.2
Sample C Male 215.2
Sample D Male 227.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

215.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 215.8
Samples: 4

Max nTPM: 265.9
Min nTPM: 163.9
Sample A Male 265.9
Sample B Male 207.3
Sample C Female 163.9
Sample D Female 225.9

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