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INPP4A
HPA
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  • INPP4A
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

INPP4A
Synonyms INPP4
Gene descriptioni

Full gene name according to HGNC.

Inositol polyphosphate-4-phosphatase type I A
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Metabolic proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 2
Cytoband q11.2
Chromosome location (bp) 98444854 - 98594392
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000040933 (version 109)
Entrez gene 3631
HGNC HGNC:6074
UniProt Q96PE3 (UniProt - Evidence at protein level)
neXtProt NX_Q96PE3
GeneCards INPP4A
Antibodypedia INPP4A antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Catalyzes the hydrolysis of the 4-position phosphate of phosphatidylinositol 3,4-bisphosphate (PtdIns(3,4)P2) 1, 2. Catalyzes also inositol 1,3,4-trisphosphate and inositol 1,4-bisphosphate (By similarity). Antagonizes the PI3K-AKT/PKB signaling pathway by dephosphorylating phosphoinositides and thereby modulating cell cycle progression and cell survival (By similarity) 3. May protect neurons from excitotoxic cell death by regulating the synaptic localization of cell surface N-methyl-D-aspartate-type glutamate receptors (NMDARs) and NMDAR-mediated excitatory postsynaptic current (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Hydrolase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Lipid metabolism
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes an Mg++ independent enzyme that hydrolyzes the 4-position phosphate from the inositol ring of phosphatidylinositol 3,4-bisphosphate, inositol 1,3,4-trisphosphate, and inositol 3,4-bisphosphate. Multiple transcript variants encoding distinct isoforms have been described. [provided by RefSeq, Aug 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
INPP4A-201
ENSP00000386704
ENST00000409016
Q96PE3
[Direct mapping] Inositol polyphosphate-4-phosphatase type I A
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006629 [lipid metabolic process]
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0007165 [signal transduction]
GO:0014069 [postsynaptic density]
GO:0016020 [membrane]
GO:0016316 [phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity]
GO:0016787 [hydrolase activity]
GO:0017161 [inositol-1,3,4-trisphosphate 4-phosphatase activity]
GO:0031901 [early endosome membrane]
GO:0031965 [nuclear membrane]
GO:0036092 [phosphatidylinositol-3-phosphate biosynthetic process]
GO:0043647 [inositol phosphate metabolic process]
GO:0045202 [synapse]
GO:0052828 [inositol-3,4-bisphosphate 4-phosphatase activity]
GO:0055038 [recycling endosome membrane]
Show all
938 aa
105.7 kDa
No 0
INPP4A-202
ENSP00000386329
ENST00000409463
B8ZZB2
[Direct mapping] Inositol polyphosphate-4-phosphatase type I A
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0016316 [phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity]
GO:0036092 [phosphatidylinositol-3-phosphate biosynthetic process]
Show all
306 aa
34.1 kDa
No 0
INPP4A-203
ENSP00000387294
ENST00000409540
Q96PE3
[Direct mapping] Inositol polyphosphate-4-phosphatase type I A
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006629 [lipid metabolic process]
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0007165 [signal transduction]
GO:0014069 [postsynaptic density]
GO:0016020 [membrane]
GO:0016316 [phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity]
GO:0016787 [hydrolase activity]
GO:0017161 [inositol-1,3,4-trisphosphate 4-phosphatase activity]
GO:0031901 [early endosome membrane]
GO:0031965 [nuclear membrane]
GO:0036092 [phosphatidylinositol-3-phosphate biosynthetic process]
GO:0043647 [inositol phosphate metabolic process]
GO:0045202 [synapse]
GO:0052828 [inositol-3,4-bisphosphate 4-phosphatase activity]
GO:0055038 [recycling endosome membrane]
Show all
954 aa
107.3 kDa
No 2
INPP4A-204
ENSP00000386777
ENST00000409851
Q96PE3
[Direct mapping] Inositol polyphosphate-4-phosphatase type I A
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006629 [lipid metabolic process]
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0007165 [signal transduction]
GO:0014069 [postsynaptic density]
GO:0016020 [membrane]
GO:0016316 [phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity]
GO:0016787 [hydrolase activity]
GO:0017161 [inositol-1,3,4-trisphosphate 4-phosphatase activity]
GO:0031901 [early endosome membrane]
GO:0031965 [nuclear membrane]
GO:0036092 [phosphatidylinositol-3-phosphate biosynthetic process]
GO:0043647 [inositol phosphate metabolic process]
GO:0045202 [synapse]
GO:0052828 [inositol-3,4-bisphosphate 4-phosphatase activity]
GO:0055038 [recycling endosome membrane]
Show all
972 aa
109.3 kDa
No 0
INPP4A-209
ENSP00000427722
ENST00000523221
Q96PE3
[Direct mapping] Inositol polyphosphate-4-phosphatase type I A
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006629 [lipid metabolic process]
GO:0006661 [phosphatidylinositol biosynthetic process]
GO:0007165 [signal transduction]
GO:0014069 [postsynaptic density]
GO:0016020 [membrane]
GO:0016316 [phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity]
GO:0016787 [hydrolase activity]
GO:0017161 [inositol-1,3,4-trisphosphate 4-phosphatase activity]
GO:0031901 [early endosome membrane]
GO:0031965 [nuclear membrane]
GO:0036092 [phosphatidylinositol-3-phosphate biosynthetic process]
GO:0043647 [inositol phosphate metabolic process]
GO:0045202 [synapse]
GO:0052828 [inositol-3,4-bisphosphate 4-phosphatase activity]
GO:0055038 [recycling endosome membrane]
Show all
977 aa
110 kDa
No 0
INPP4A-210
ENSP00000516656
ENST00000706935
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0016316 [phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity]
Show all
962 aa
108.3 kDa
No 2

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