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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:51.2 nTPM
HPA Brain:26.0 nTPM
GTEx:51.2 nTPM
FANTOM5:6.7 Scaled Tags Per Million
Pig:3.2 nTPM
Mouse:2.6 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.0
Sample id Sample description nTPM
Amygdala
nTPM: 26.0
1987 Female, age 91, left hemisphere 31.6
2514 Male, age 75, right hemisphere 26.0
2695 Female, age 67, right hemisphere 25.8
2517 Female, age 94, left hemisphere 24.7
2814 Male, age 76, right hemisphere 21.7
Basal amygdala
nTPM: 17.6
1955 Male, age 76, both hemispheres 23.3
2609 Male, age 75, right hemisphere 20.6
2685 Female, age 94, left hemisphere 19.3
2243 Female, age 91, right hemisphere 17.5
2110 Male, age 80, left hemisphere 15.8
2827 Female, age 67, right hemisphere 9.4
Central amygdala
nTPM: 19.2
2701 Female, age 91, right hemisphere 22.9
1905 Male, age 76, both hemispheres 22.3
2826 Female, age 94, left hemisphere 20.5
2515 Male, age 75, right hemisphere 17.5
2239 Male, age 80, left hemisphere 12.7
Corticomedial amygdala
nTPM: 18.2
2242 Female, age 91, right hemisphere 23.0
2428 Male, age 75, right hemisphere 21.2
2240 Male, age 76, both hemispheres 20.4
2429 Female, age 94, left hemisphere 18.7
2829 Male, age 80, left hemisphere 14.4
2535 Female, age 67, right hemisphere 11.6
Lateral amygdala
nTPM: 16.3
1883 Male, age 76, both hemispheres 19.7
2256 Male, age 80, left hemisphere 19.6
2255 Female, age 91, right hemisphere 18.0
2534 Female, age 94, left hemisphere 16.5
2516 Male, age 75, right hemisphere 15.2
2830 Female, age 67, right hemisphere 8.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 51.2
Samples: 152

Max nTPM: 125.2
Min nTPM: 4.9
Std nTPM: 24.3
Median nTPM: 45.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 125.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 124.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 115.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 113.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 107.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 104.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 102.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 98.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 90.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 90.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 88.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 88.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 87.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 87.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 87.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 86.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 86.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 82.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 80.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 80.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 79.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 78.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 78.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 77.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 75.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 74.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 74.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 73.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 72.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 71.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 70.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 69.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 68.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 68.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 67.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 66.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 66.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 65.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 65.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 65.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 65.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 64.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 64.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 64.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 63.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 62.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 60.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 60.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 59.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 58.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 58.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 58.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 57.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 57.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 57.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 57.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 56.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 56.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 55.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 54.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 53.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 53.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 53.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 53.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 53.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 52.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 52.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 51.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 49.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 47.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 47.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 46.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 46.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 46.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 46.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 45.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 45.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 45.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 45.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 44.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 43.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 43.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 42.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 42.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 42.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 42.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 41.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 41.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 41.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 41.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 41.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 40.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 40.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 39.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 39.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 39.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 39.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 38.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 38.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 38.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 38.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 38.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 37.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 37.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 37.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 36.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 36.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 35.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 35.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 35.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 35.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 34.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 33.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 33.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 33.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 33.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 32.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 32.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 32.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 32.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 31.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 31.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 31.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 31.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 30.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 29.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 29.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 28.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 28.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 27.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 27.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 27.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 27.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 27.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 25.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 25.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 24.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 23.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 22.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 22.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 21.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 20.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 17.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 16.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 15.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 14.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 14.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 14.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 14.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 13.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 12.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 4.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

6.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 6.7
FF:10151-102I7 76 years, female 6.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3.2
Pig sample Sample description nTPM
Amygdala
nTPM: 3.2
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.8
Sample A Female 2.8
Sample B Female 3.6
Sample C Male 3.4
Sample D Male 3.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 2.6
Samples: 4

Max nTPM: 2.9
Min nTPM: 2.3
Sample A Male 2.9
Sample B Male 2.6
Sample C Female 2.3
Sample D Female 2.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
67978490 Antisense, RP_040923_01_C06, Mouse strain C57BL/6J (56 days, male) 0.0

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