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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:140.2 nTPM
HPA Brain:75.4 nTPM
GTEx:140.2 nTPM
FANTOM5:81.5 Scaled Tags Per Million
Pig:107.3 nTPM
Mouse:367.4 nTPM
Allen mouse:14.8 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.4
Sample id Sample description nTPM
Amygdala
nTPM: 75.4
2814 Male, age 76, right hemisphere 87.6
1987 Female, age 91, left hemisphere 84.0
2517 Female, age 94, left hemisphere 76.0
2514 Male, age 75, right hemisphere 74.2
2695 Female, age 67, right hemisphere 55.2
Basal amygdala
nTPM: 66.3
2685 Female, age 94, left hemisphere 79.0
2110 Male, age 80, left hemisphere 76.2
2243 Female, age 91, right hemisphere 70.1
1955 Male, age 76, both hemispheres 64.6
2609 Male, age 75, right hemisphere 63.1
2827 Female, age 67, right hemisphere 45.0
Central amygdala
nTPM: 74.4
2826 Female, age 94, left hemisphere 92.7
1905 Male, age 76, both hemispheres 83.9
2239 Male, age 80, left hemisphere 70.6
2515 Male, age 75, right hemisphere 64.8
2701 Female, age 91, right hemisphere 60.0
Corticomedial amygdala
nTPM: 69.2
2829 Male, age 80, left hemisphere 94.1
2242 Female, age 91, right hemisphere 74.5
2428 Male, age 75, right hemisphere 73.8
2429 Female, age 94, left hemisphere 72.4
2240 Male, age 76, both hemispheres 53.5
2535 Female, age 67, right hemisphere 46.7
Lateral amygdala
nTPM: 71.6
2534 Female, age 94, left hemisphere 101.9
1883 Male, age 76, both hemispheres 90.8
2516 Male, age 75, right hemisphere 72.2
2255 Female, age 91, right hemisphere 59.2
2256 Male, age 80, left hemisphere 57.2
2830 Female, age 67, right hemisphere 48.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 140.2
Samples: 152

Max nTPM: 441.9
Min nTPM: 68.3
Std nTPM: 55.6
Median nTPM: 132.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 441.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 337.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 331.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 319.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 252.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 248.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 231.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 228.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 227.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 224.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 214.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 206.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 205.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 203.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 201.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 199.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 199.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 197.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 196.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 196.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 196.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 195.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 195.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 194.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 190.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 186.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 186.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 185.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 178.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 178.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 175.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 175.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 173.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 172.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 169.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 169.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 166.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 165.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 162.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 161.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 160.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 160.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 159.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 159.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 157.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 157.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 155.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 153.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 151.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 151.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 151.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 150.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 148.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 148.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 147.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 147.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 147.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 146.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 143.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 142.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 140.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 139.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 139.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 139.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 138.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 137.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 137.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 135.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 134.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 134.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 134.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 134.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 133.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 133.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 133.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 132.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 131.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 131.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 129.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 129.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 128.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 125.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 124.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 124.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 122.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 120.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 119.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 119.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 118.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 118.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 117.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 116.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 116.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 116.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 115.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 115.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 113.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 113.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 112.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 110.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 109.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 109.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 109.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 109.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 109.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 108.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 107.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 106.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 106.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 105.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 105.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 104.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 103.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 103.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 103.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 101.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 100.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 99.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 98.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 97.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 97.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 95.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 95.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 93.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 93.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 92.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 91.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 90.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 90.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 89.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 89.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 87.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 87.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 86.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 86.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 86.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 82.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 82.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 81.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 81.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 78.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 77.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 76.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 75.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 75.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 74.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 72.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 71.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 71.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 69.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 69.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 68.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

81.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 81.5
FF:10151-102I7 76 years, female 81.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.3
Pig sample Sample description nTPM
Amygdala
nTPM: 107.3
Samples: 4

Max nTPM: 162.2
Min nTPM: 83.9
Sample A Female 162.2
Sample B Female 83.9
Sample C Male 93.7
Sample D Male 89.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

367.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 367.4
Samples: 4

Max nTPM: 406.4
Min nTPM: 337.3
Sample A Male 366.3
Sample B Male 337.3
Sample C Female 406.4
Sample D Female 359.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.8
71836889 Antisense, RP_051017_02_F07, Mouse strain C57BL/6J (56 days, male) 15.5
68743955 Antisense, RP_050203_01_H10, Mouse strain C57BL/6J (56 days, male) 14.1

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