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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:112.0 nTPM
HPA:112.0 nTPM
GTEx:97.2 nTPM
FANTOM5:288.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA046119Antibody HPA063535Antibody CAB021089
Glandular cells HighHighHigh






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.0
overview
Male, age 65
Small intestine sample 232
nTPM: 114.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 122
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 91
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 120.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 97.2
Samples: 187

Max nTPM: 199.1
Min nTPM: 39.9
Std nTPM: 33.2
Median nTPM: 97.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 199.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 182.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 179.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 167.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 163.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 159.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 157.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 156.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 154.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 154.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 153.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 152.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 150.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 150.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 147.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 145.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 144.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 144.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 143.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 140.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 139.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 138.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 137.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 135.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 134.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 130.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 130.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 129.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 127.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 127.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 126.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 125.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 125.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 125.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 125.1
GTEX-1192X-2526-SM-59868 50-59 years, male 124.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 124.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 124.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 124.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 124.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 124.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 123.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 123.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 123.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 123.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 122.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 121.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 121.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 120.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 118.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 118.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 117.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 116.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 116.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 116.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 115.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 114.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 113.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 112.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 111.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 111.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 110.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 110.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 110.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 109.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 109.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 109.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 108.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 108.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 108.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 108.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 107.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 107.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 107.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 107.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 106.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 106.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 105.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 105.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 105.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 105.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 105.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 104.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 104.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 104.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 103.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 102.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 101.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 101.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 100.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 99.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 98.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 98.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 97.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 96.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 96.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 96.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 96.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 95.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 95.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 95.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 94.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 93.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 92.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 92.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 92.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 90.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 90.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 89.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 89.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 87.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 87.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 85.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 85.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 84.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 84.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 84.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 83.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 83.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 83.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 82.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 82.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 82.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 81.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 81.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 81.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 80.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 80.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 78.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 78.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 78.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 77.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 76.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 76.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 74.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 73.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 72.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 72.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 71.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 71.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 71.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 70.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 68.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 66.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 65.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 64.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 63.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 63.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 63.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 62.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 61.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 61.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 61.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 61.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 60.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 60.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 60.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 57.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 56.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 55.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 55.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 55.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 54.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 54.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 53.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 53.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 53.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 53.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 53.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 52.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 51.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 51.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 50.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 50.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 50.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 48.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 47.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 47.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 47.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 46.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 45.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 44.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 42.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 41.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 40.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 39.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 39.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

288.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 288.5
FF:10024-101D6 15,40,85 years, mixed 288.5

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