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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:425.3 nTPM
HPA Brain:568.5 nTPM
GTEx:425.3 nTPM
FANTOM5:1127.2 Scaled Tags Per Million
Pig:644.8 nTPM
Mouse:598.9 nTPM
Allen mouse:20.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

568.5
Sample id Sample description nTPM
Amygdala
nTPM: 568.5
2514 Male, age 75, right hemisphere 731.8
1987 Female, age 91, left hemisphere 607.1
2517 Female, age 94, left hemisphere 550.3
2695 Female, age 67, right hemisphere 477.9
2814 Male, age 76, right hemisphere 475.5
Basal amygdala
nTPM: 441.9
2609 Male, age 75, right hemisphere 589.8
2110 Male, age 80, left hemisphere 540.5
2685 Female, age 94, left hemisphere 426.1
2243 Female, age 91, right hemisphere 423.7
1955 Male, age 76, both hemispheres 402.7
2827 Female, age 67, right hemisphere 268.8
Central amygdala
nTPM: 463.5
2515 Male, age 75, right hemisphere 570.2
2826 Female, age 94, left hemisphere 508.2
1905 Male, age 76, both hemispheres 453.6
2239 Male, age 80, left hemisphere 450.4
2701 Female, age 91, right hemisphere 335.3
Corticomedial amygdala
nTPM: 455.8
2428 Male, age 75, right hemisphere 625.4
2829 Male, age 80, left hemisphere 517.0
2242 Female, age 91, right hemisphere 486.1
2429 Female, age 94, left hemisphere 475.7
2240 Male, age 76, both hemispheres 345.9
2535 Female, age 67, right hemisphere 284.9
Lateral amygdala
nTPM: 457.5
2516 Male, age 75, right hemisphere 657.0
1883 Male, age 76, both hemispheres 484.4
2256 Male, age 80, left hemisphere 468.9
2534 Female, age 94, left hemisphere 464.7
2255 Female, age 91, right hemisphere 372.4
2830 Female, age 67, right hemisphere 297.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

425.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 425.3
Samples: 152

Max nTPM: 909.6
Min nTPM: 14.7
Std nTPM: 125.1
Median nTPM: 414.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 909.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 723.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 701.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 693.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 656.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 649.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 648.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 631.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 629.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 608.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 603.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 601.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 597.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 594.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 581.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 578.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 578.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 568.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 567.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 564.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 555.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 553.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 553.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 547.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 545.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 544.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 542.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 540.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 537.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 534.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 534.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 533.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 533.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 529.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 529.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 528.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 526.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 519.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 515.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 513.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 513.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 509.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 505.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 505.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 492.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 491.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 484.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 480.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 478.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 477.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 471.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 470.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 469.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 468.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 465.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 465.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 464.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 464.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 457.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 456.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 448.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 442.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 441.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 440.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 439.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 437.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 432.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 431.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 431.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 430.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 419.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 418.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 418.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 416.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 416.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 415.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 414.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 414.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 413.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 404.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 402.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 401.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 401.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 400.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 397.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 395.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 392.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 387.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 385.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 381.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 379.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 379.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 378.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 375.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 374.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 373.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 371.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 365.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 362.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 361.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 353.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 353.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 353.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 352.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 350.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 347.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 347.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 344.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 343.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 342.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 341.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 338.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 337.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 334.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 334.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 332.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 328.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 325.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 324.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 323.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 320.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 317.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 317.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 317.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 316.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 309.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 304.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 300.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 300.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 299.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 297.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 296.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 292.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 289.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 289.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 287.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 287.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 286.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 280.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 279.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 277.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 274.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 265.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 261.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 253.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 253.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 248.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 235.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 222.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 219.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 127.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 14.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1127.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1127.2
FF:10151-102I7 76 years, female 1127.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

644.8
Pig sample Sample description nTPM
Amygdala
nTPM: 644.9
Samples: 4

Max nTPM: 706.5
Min nTPM: 594.5
Sample A Female 652.2
Sample B Female 706.5
Sample C Male 594.5
Sample D Male 626.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

598.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 598.9
Samples: 4

Max nTPM: 653.4
Min nTPM: 531.1
Sample A Male 531.1
Sample B Male 605.3
Sample C Female 653.4
Sample D Female 605.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.2
544520 Antisense, RP_040324_01_G06, Mouse strain C57BL/6J (56 days, male) 21.3
74357593 Antisense, RP_060117_01_A08, Mouse strain C57BL/6J (56 days, male) 19.1

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