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GPM6B
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  • GPM6B
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:350.6 nTPM
FANTOM5:686.0 Scaled Tags Per Million
Pig:668.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002913
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

350.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 350.6
Samples: 246

Max nTPM: 783.3
Min nTPM: 152.5
Std nTPM: 82.1
Median nTPM: 340.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 783.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 634.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 580.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 559.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 556.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 534.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 529.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 519.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 510.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 501.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 498.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 495.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 494.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 484.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 482.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 479.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 478.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 477.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 472.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 468.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 459.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 457.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 455.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 454.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 453.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 448.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 448.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 447.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 446.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 445.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 444.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 444.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 439.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 439.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 439.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 436.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 436.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 433.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 432.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 431.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 430.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 428.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 426.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 425.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 424.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 424.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 423.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 422.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 417.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 413.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 408.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 405.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 404.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 397.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 396.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 395.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 394.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 394.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 394.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 392.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 392.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 391.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 391.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 391.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 390.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 388.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 388.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 388.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 386.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 386.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 386.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 385.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 384.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 384.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 383.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 382.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 381.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 380.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 380.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 380.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 379.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 379.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 376.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 374.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 372.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 371.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 371.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 370.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 368.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 367.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 366.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 365.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 364.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 362.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 362.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 361.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 360.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 360.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 359.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 357.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 357.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 357.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 356.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 355.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 354.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 354.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 353.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 353.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 349.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 348.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 348.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 346.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 346.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 345.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 344.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 344.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 344.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 343.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 342.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 341.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 341.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 341.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 340.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 340.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 339.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 338.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 337.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 337.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 337.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 337.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 337.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 336.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 335.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 334.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 334.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 334.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 332.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 332.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 332.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 331.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 328.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 327.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 325.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 325.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 324.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 324.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 323.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 323.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 322.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 321.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 321.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 320.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 319.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 319.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 318.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 316.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 315.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 314.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 314.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 313.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 311.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 310.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 310.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 310.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 309.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 309.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 308.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 308.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 308.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 304.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 304.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 303.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 299.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 297.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 296.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 295.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 295.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 295.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 295.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 294.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 294.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 294.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 293.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 293.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 292.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 292.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 291.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 290.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 290.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 290.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 290.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 290.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 290.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 289.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 288.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 288.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 287.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 286.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 284.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 283.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 282.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 280.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 280.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 279.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 277.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 276.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 276.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 275.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 274.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 274.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 273.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 272.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 270.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 270.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 269.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 269.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 269.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 266.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 265.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 263.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 261.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 259.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 259.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 258.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 257.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 254.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 253.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 250.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 245.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 245.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 245.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 239.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 237.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 237.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 234.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 232.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 229.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 226.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 225.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 221.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 215.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 210.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 205.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 198.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 172.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 152.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

686.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 686.0
FF:10164-103B2 76 years, female 686.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

668.1
Pig sample Sample description nTPM
Caudate
nTPM: 668.1
Samples: 4

Max nTPM: 819.2
Min nTPM: 587.7
Sample A Female 587.7
Sample B Female 628.9
Sample C Male 819.2
Sample D Male 636.5

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