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  • GPM6B
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:719.1 nTPM
HPA Brain:798.3 nTPM
GTEx:719.1 nTPM
FANTOM5:1432.2 Scaled Tags Per Million
Pig:1000.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

798.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 760.3
1981 Female, age 72, midline 971.6
2048 Male, age 55, midline 896.9
2816 Male, age 47, midline 742.2
2194 Female, age 79, both hemispheres 611.2
2565 Male, age 75, midline 579.6
Cervical spinal cord, dorsal horn
nTPM: 798.3
2296 Male, age 66, both hemispheres 1398.9
2173 Female, age 72, unknown 1039.6
2069 Male, age 47, both hemispheres 866.1
1877 Male, age 55, unknown 657.9
2721 Male, age 90, both hemispheres 423.7
2297 Male, age 75, both hemispheres 403.8
Cervical spinal cord, ventral horn
nTPM: 733.1
2098 Female, age 72, unknown 1078.0
2068 Male, age 55, unknown 745.3
2480 Male, age 75, both hemispheres 705.6
2809 Male, age 90, both hemispheres 681.7
2295 Male, age 66, both hemispheres 631.6
2820 Female, age 79, both hemispheres 556.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

719.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 719.1
Samples: 159

Max nTPM: 1265.1
Min nTPM: 224.5
Std nTPM: 215.0
Median nTPM: 719.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1265.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1196.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1181.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1180.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1175.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1099.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1086.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1048.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1047.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1038.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1035.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1022.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1013.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1001.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 988.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 986.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 984.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 974.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 965.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 961.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 956.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 947.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 942.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 937.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 930.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 930.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 920.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 917.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 914.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 909.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 906.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 906.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 905.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 902.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 902.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 898.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 896.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 885.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 872.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 870.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 867.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 865.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 858.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 855.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 855.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 853.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 843.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 840.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 832.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 830.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 826.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 826.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 824.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 824.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 819.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 818.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 811.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 811.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 808.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 785.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 784.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 779.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 778.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 778.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 777.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 770.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 768.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 765.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 758.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 756.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 751.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 751.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 749.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 743.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 733.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 731.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 726.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 721.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 720.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 719.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 715.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 714.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 711.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 703.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 702.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 702.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 701.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 700.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 695.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 691.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 689.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 687.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 686.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 681.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 679.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 679.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 676.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 674.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 672.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 660.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 659.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 657.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 641.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 638.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 638.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 628.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 625.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 621.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 621.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 619.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 612.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 612.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 611.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 596.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 592.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 589.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 588.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 582.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 578.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 576.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 572.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 570.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 567.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 559.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 553.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 547.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 547.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 545.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 541.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 539.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 529.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 522.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 493.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 493.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 488.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 485.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 475.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 471.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 466.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 452.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 451.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 445.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 430.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 374.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 369.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 366.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 365.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 365.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 358.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 357.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 347.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 346.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 336.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 298.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 295.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 295.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 273.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 268.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 224.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1432.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1432.2
FF:10181-103D1 60 years, female 1518.4
FF:10159-103A6 76 years, female 1346.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1000.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 812.7
Samples: 4

Max nTPM: 955.5
Min nTPM: 700.0
Sample A Female 751.0
Sample B Female 955.5
Sample C Male 700.0
Sample D Male 844.2
Ventral spinal cord
nTPM: 1000.7
Samples: 4

Max nTPM: 1224.1
Min nTPM: 784.8
Sample A Female 1031.4
Sample B Female 962.5
Sample C Male 784.8
Sample D Male 1224.1

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